Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 3.8e-140 501.5 259 100.0
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 3.1e-65 252.7 230 58.3
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.9e-63 246.1 230 57.0
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 2.1e-61 240.0 230 60.0
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 2.1e-61 240.0 236 55.9
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 4.6e-61 238.8 232 54.3
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 4.6e-61 238.8 230 57.0
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.8e-60 236.9 229 56.3
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 1.8e-60 236.9 230 53.9
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 1.8e-60 236.9 230 54.8
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 1.8e-60 236.9 233 56.2
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.9e-60 235.7 232 56.5
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 5.1e-60 235.3 232 55.6
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 3.3e-59 232.6 231 56.3
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 4.3e-59 232.3 234 54.3
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 5.7e-59 231.9 233 56.7
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 7.4e-59 231.5 234 54.7
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 9.7e-59 231.1 232 55.6
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 1.3e-58 230.7 235 52.3
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 1.3e-58 230.7 234 54.3
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 1.3e-58 230.7 238 54.6
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 1.3e-58 230.7 227 53.7
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.3e-58 230.7 230 53.5
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.6e-58 230.3 232 53.4
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.2e-58 229.9 231 55.8
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 2.2e-58 229.9 231 56.7
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 2.8e-58 229.6 230 51.7
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 4.8e-58 228.8 235 52.8
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 4.8e-58 228.8 234 55.1
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.3e-58 228.4 230 51.7
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 6.3e-58 228.4 232 53.4
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 6.3e-58 228.4 230 53.9
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 8.2e-58 228.0 233 56.2
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 1.1e-57 227.6 233 53.6
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.4e-57 227.3 232 54.3
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.8e-57 226.9 231 51.5
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.8e-57 226.9 234 54.7
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 2.4e-57 226.5 231 51.5
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 2.4e-57 226.5 228 52.2
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 2.4e-57 226.5 234 54.3
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 4.1e-57 225.7 232 54.3
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 4.1e-57 225.7 230 50.4
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 5.3e-57 225.3 229 53.7
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 5.3e-57 225.3 232 53.9
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 6.9e-57 224.9 232 54.3
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 9.0e-57 224.6 231 52.8
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.2e-56 224.2 232 55.2
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.5e-56 223.8 201 59.2
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.5e-56 223.8 240 52.1
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 2.0e-56 223.4 230 53.0
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.0e-56 223.4 230 50.4
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 2.6e-56 223.0 231 54.5
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.6e-56 223.0 232 54.7
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.4e-56 222.6 239 51.0
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 5.9e-56 221.9 232 53.0
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.2e-55 219.9 251 49.8
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 2.9e-55 219.5 232 53.4
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.9e-55 219.5 230 51.3
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 3.8e-55 219.2 232 52.2
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.5e-55 218.4 233 54.1
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 6.5e-55 218.4 231 49.8
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.4e-54 217.2 233 52.8
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 1.9e-54 216.9 232 50.0
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 2.5e-54 216.5 230 53.5
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.5e-54 216.5 232 55.2
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 3.2e-54 216.1 230 53.0
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.2e-54 216.1 233 53.2
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 3.2e-54 216.1 228 49.6
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 4.2e-54 215.7 256 49.2
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 4.2e-54 215.7 229 52.4
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 7.2e-54 214.9 232 53.0
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.6e-53 213.8 230 50.4
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.6e-53 213.8 231 48.9
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.1e-53 213.4 230 53.0
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.1e-53 213.4 230 50.4
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.1e-53 213.4 267 47.9
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 2.7e-53 213.0 232 50.0
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.7e-53 213.0 234 53.0
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 3.6e-53 212.6 217 53.9
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 3.6e-53 212.6 234 49.1
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 3.6e-53 212.6 246 49.6
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 4.6e-53 212.2 248 51.2
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 4.6e-53 212.2 232 50.0
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 6.1e-53 211.8 232 50.4
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 7.9e-53 211.5 232 50.4
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 1.0e-52 211.1 198 56.6
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 1.8e-52 210.3 263 46.4
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 2.3e-52 209.9 232 52.2
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 3.9e-52 209.1 233 53.2
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 5.1e-52 208.8 230 50.0
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 5.1e-52 208.8 257 48.6
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 6.7e-52 208.4 232 50.4
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 8.8e-52 208.0 232 50.4
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 1.1e-51 207.6 230 50.4
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.5e-51 207.2 230 50.0
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 3.3e-51 206.1 233 50.6
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 5.7e-51 205.3 232 49.6
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 7.4e-51 204.9 241 48.5
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 7.4e-51 204.9 233 50.2
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 7.4e-51 204.9 233 50.2
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.7e-50 203.8 173 61.3
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 2.2e-50 203.4 230 49.6
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.8e-50 203.0 231 51.9
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 4.8e-50 202.2 159 65.4
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 4.8e-50 202.2 233 50.2
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.1e-49 201.1 237 48.9
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 2.4e-49 199.9 227 50.7
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 2.4e-49 199.9 227 50.7
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 3.1e-49 199.5 232 51.7
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.5e-48 197.2 230 46.1
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 2.0e-48 196.8 231 47.6
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.0e-48 196.8 215 49.3
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 7.7e-48 194.9 231 48.9
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 7.7e-48 194.9 231 48.9
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 5.5e-46 188.7 235 45.5
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 7.2e-46 188.3 231 45.0
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 9.4e-46 188.0 264 43.2
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.1e-45 186.8 260 42.7
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 7.9e-45 184.9 189 52.4
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.0e-44 184.5 237 46.4
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 1.0e-44 184.5 153 57.5
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.8e-44 183.7 165 57.0
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 2.0e-43 180.3 234 45.3
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.3e-43 179.5 232 47.0
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 5.7e-43 178.7 229 45.4
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 1.3e-42 177.6 232 44.4
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 5.9e-40 168.7 120 69.2
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 3.2e-38 162.9 153 55.6
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 8.0e-37 158.3 124 64.5
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 1.8e-36 157.1 134 59.0
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 1.1e-35 154.5 238 40.8
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 5.7e-35 152.1 122 57.4
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.8e-34 149.1 242 42.1
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 3.5e-32 142.9 232 37.1
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 8.8e-28 128.3 129 51.9
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.2e-27 127.9 184 42.9
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 8.3e-26 121.7 118 59.3
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 5.3e-25 119.0 84 63.1
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.3e-23 114.4 119 49.6
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.7e-23 114.0 119 49.6
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.7e-23 114.0 118 48.3
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 8.5e-23 111.7 118 49.2
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 3.2e-22 109.8 171 41.5
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.0e-20 104.8 162 40.1
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 5.2e-20 102.4 132 45.5
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 5.2e-20 102.4 132 45.5
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 5.2e-20 102.4 132 45.5
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 5.5e-14 82.4 116 48.3
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.8e-12 77.4 248 29.0
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 5.2e-12 75.9 200 32.0
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 2.0e-11 73.9 108 44.4
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 7.5e-11 72.0 103 39.8
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 9.2e-09 65.1 109 39.4
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 4.5e-08 62.8 47 59.6


User provided reference genes

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