Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 7.5e-220 766.9 395 100.0
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 4.2e-106 389.0 198 98.0
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 1.6e-100 370.5 381 54.1
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 3.5e-100 369.4 373 53.4
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.7e-97 359.8 380 51.6
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 1.1e-93 347.8 380 49.7
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 5.4e-93 345.5 383 49.9
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 5.4e-93 345.5 380 47.6
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 5.4e-93 345.5 380 48.4
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 7.7e-92 341.7 388 49.0
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.6e-89 334.0 382 49.5
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 2.3e-88 330.1 383 48.3
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 6.8e-88 328.6 396 48.2
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 1.5e-87 327.4 386 47.4
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 5.7e-87 325.5 385 48.6
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 2.8e-86 323.2 383 47.8
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 6.3e-86 322.0 383 46.5
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.1e-85 321.2 394 46.7
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 1.8e-85 320.5 381 47.5
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.4e-85 320.1 382 44.5
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 9.2e-85 318.2 385 45.2
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 2.7e-84 316.6 383 47.0
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 7.8e-84 315.1 385 44.2
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.3e-83 314.3 387 46.8
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 2.9e-83 313.2 386 45.1
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 5.0e-83 312.4 324 52.8
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 8.6e-83 311.6 384 44.3
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.5e-82 310.8 384 44.8
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.5e-82 310.8 400 46.5
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 9.5e-82 308.1 324 50.9
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 4.7e-81 305.8 384 45.6
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 8.0e-81 305.1 387 45.0
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 1.0e-80 304.7 384 45.6
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.4e-80 304.3 380 47.4
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 4.0e-80 302.8 384 44.5
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 5.2e-80 302.4 385 45.7
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 5.2e-80 302.4 348 48.6
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 3.4e-79 299.7 384 45.3
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 4.4e-79 299.3 389 45.0
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 7.5e-79 298.5 400 45.0
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 2.9e-78 296.6 389 45.8
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.9e-77 293.9 382 44.8
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.9e-77 293.9 386 44.0
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 1.9e-77 293.9 392 44.1
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 7.0e-77 292.0 380 45.0
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 1.6e-76 290.8 380 44.2
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 3.5e-76 289.7 382 44.8
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 7.8e-76 288.5 384 44.8
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 7.8e-76 288.5 388 43.8
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 5.0e-75 285.8 383 46.0
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 1.5e-74 284.3 395 43.0
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.9e-74 283.9 389 45.2
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 4.3e-74 282.7 380 44.2
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 9.5e-74 281.6 380 44.5
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 3.6e-73 279.6 381 43.6
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 1.1e-72 278.1 381 43.8
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 1.4e-72 277.7 392 44.4
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 1.8e-72 277.3 384 44.3
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 2.3e-72 276.9 384 43.5
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 4.0e-72 276.2 378 43.4
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 4.4e-71 272.7 378 43.4
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.7e-70 270.8 378 43.1
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 3.7e-70 269.6 378 42.3
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.1e-69 268.1 395 42.5
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.9e-69 267.3 326 46.0
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 5.4e-69 265.8 284 50.0
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 9.2e-69 265.0 395 41.8
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.6e-68 264.2 378 42.1
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 1.6e-68 264.2 378 42.3
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 3.5e-68 263.1 397 41.8
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.3e-67 261.2 326 45.4
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 1.7e-67 260.8 378 42.6
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 3.9e-67 259.6 378 42.3
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 5.1e-67 259.2 386 43.0
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.2e-65 254.6 379 43.0
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 1.2e-65 254.6 394 42.6
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.1e-65 253.8 310 46.1
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 8.1e-65 251.9 266 51.5
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 1.5e-63 247.7 340 44.4
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.5e-63 247.7 348 43.7
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.7e-62 244.2 318 46.5
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 4.1e-61 239.6 417 38.6
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 3.0e-59 233.4 378 40.5
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.9e-58 230.7 234 50.9
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 4.3e-58 229.6 379 38.8
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 5.6e-58 229.2 380 41.1
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 6.2e-57 225.7 379 38.3
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 6.2e-57 225.7 379 38.3
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 8.1e-57 225.3 378 37.8
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 1.1e-56 224.9 201 56.2
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.2e-55 221.5 347 41.2
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 3.4e-55 219.9 379 39.1
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 3.4e-55 219.9 379 37.5
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 4.4e-55 219.5 347 41.5
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 4.4e-55 219.5 347 41.5
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 1.3e-54 218.0 277 41.5
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 2.2e-54 217.2 344 39.5
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.9e-53 214.2 378 36.2
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 4.2e-53 213.0 346 40.2
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 4.2e-53 213.0 346 40.2
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.6e-52 211.1 379 36.1
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.0e-51 208.4 325 41.8
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 1.6e-49 201.1 398 33.7
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 3.6e-49 199.9 213 50.7
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 1.4e-48 198.0 196 53.6
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 5.3e-48 196.1 344 39.8
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 9.0e-48 195.3 364 39.6
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.4e-47 193.0 161 59.0
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 7.6e-47 192.2 382 34.0
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 1.2e-44 184.9 398 33.4
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 5.1e-43 179.5 144 63.9
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 3.1e-40 170.2 155 55.5
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 4.2e-37 159.8 292 35.6
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 2.7e-36 157.1 187 51.3
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 5.3e-32 142.9 268 36.2
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 7.9e-28 129.0 249 34.1
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 9.6e-26 122.1 263 34.2
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.8e-24 117.9 247 40.1
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 4.0e-24 116.7 106 51.9
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 3.8e-22 110.2 105 52.4
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 6.3e-17 92.8 286 29.7
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.2e-15 88.6 235 32.8
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 2.6e-15 87.4 115 47.8
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.8e-09 67.4 89 49.4
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 1.0e-06 58.9 195 29.7
Cre03.g197550 Chlamydomonas reinhardtii HOM05D005606 ORTHO05D006446 1.7e-06 58.2 198 27.8


User provided reference genes

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