Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G055 Amborella trichopoda HOM05D015022 ORTHO05D011070 3.2e-228 794.7 381 100.0
ATR0824G139 Amborella trichopoda HOM05D015022 ORTHO05D011070 3.7e-200 701.4 383 88.0
ATR0772G161 Amborella trichopoda HOM05D015022 ORTHO05D011070 7.8e-174 614.0 383 80.2
ATR0681G100 Amborella trichopoda HOM05D015022 ORTHO05D011070 2.7e-49 200.3 368 37.8
ATR0686G118 Amborella trichopoda HOM05D015022 ORTHO05D011070 1.5e-44 184.5 112 78.6
ATR0598G102 Amborella trichopoda HOM05D015801 ORTHO05D011070 7.8e-41 172.2 360 33.9
ATR0681G009 Amborella trichopoda HOM05D015801 ORTHO05D011070 9.6e-39 165.2 357 31.7
ATR0598G036 Amborella trichopoda HOM05D015801 ORTHO05D011070 1.3e-38 164.9 399 31.6
ATR0681G080 Amborella trichopoda HOM05D015022 ORTHO05D011070 6.2e-38 162.5 371 32.3
ATR0594G199 Amborella trichopoda HOM05D015801 ORTHO05D011070 1.2e-33 148.3 383 33.2
ATR1127G193 Amborella trichopoda HOM05D015801 ORTHO05D011070 6.2e-30 136.0 405 30.4
ATR0210G029 Amborella trichopoda HOM05D015022 ORTHO05D011070 3.2e-26 123.6 94 61.7
ATR1127G159 Amborella trichopoda HOM05D015801 ORTHO05D011070 6.0e-25 119.4 381 28.6
ATR0681G217 Amborella trichopoda HOM05D015801 ORTHO05D011070 2.3e-24 117.5 232 34.5
ATR0796G283 Amborella trichopoda HOM05D015022 ORTHO05D011070 9.6e-23 112.1 324 29.3
ATR0866G001 Amborella trichopoda HOM05D015022 ORTHO05D011070 3.7e-22 110.2 337 27.3
ATR1136G082 Amborella trichopoda HOM05D011842 ORTHO05D011366 1.3e-16 91.7 284 29.9
ATR1096G135 Amborella trichopoda HOM05D012411 ORTHO05D011070 1.8e-16 91.3 334 26.9
ATR1136G071 Amborella trichopoda HOM05D011842 ORTHO05D011366 1.8e-16 91.3 281 29.2
ATR0736G153 Amborella trichopoda HOM05D012411 ORTHO05D011070 1.5e-15 88.2 288 27.1
ATR1136G141 Amborella trichopoda HOM05D011842 ORTHO05D011366 2.5e-15 87.4 286 26.9
Haze_14521 Corylus avellana HOM05D000007 ORTHO05D000039 5.8e-12 76.3 306 25.8
ATR0605G307 Amborella trichopoda HOM05D011842 ORTHO05D011366 2.9e-11 73.9 300 26.7
BcaB02g09154 Brassica carinata HOM05D000171 ORTHO05D000101 3.8e-11 73.6 295 26.1
Aqoxy7G00608 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 8.4e-11 72.4 368 24.7
Ah.13g068830 Amaranthus hybridus HOM05D000007 ORTHO05D000017 1.9e-10 71.2 301 22.6
BraA05t19704Z Brassica rapa HOM05D000171 ORTHO05D000101 1.9e-10 71.2 294 25.9
Nn1g00748 Nelumbo nucifera HOM05D000007 ORTHO05D000017 2.5e-10 70.9 255 26.7
PGR102G1489 Punica granatum HOM05D000171 ORTHO05D000101 2.5e-10 70.9 294 23.8
FAN25G3524 Fragaria x ananassa HOM05D000007 ORTHO05D005026 4.2e-10 70.1 246 24.4
Aa31LG11G6290 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.2e-09 68.6 329 24.0
AL1G46260 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.6e-09 68.2 294 23.5
AT5G65850 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.6e-09 68.2 280 23.6
AUR62012801 Chenopodium quinoa HOM05D000007 ORTHO05D026984 1.6e-09 68.2 283 23.3
Nitab4.5_0003546g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.6e-09 68.2 287 22.6
AT5G42430 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.1e-09 67.8 261 25.3
AL1G45470 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.7e-09 67.4 300 24.3
ATR0736G009 Amborella trichopoda HOM05D013040 ORTHO05D011366 3.5e-09 67.0 293 24.9
ATR1136G003 Amborella trichopoda HOM05D011842 ORTHO05D011366 3.5e-09 67.0 306 28.8
BolC4t22474H Brassica oleracea HOM05D000171 ORTHO05D000101 3.5e-09 67.0 288 23.3
AUR62039096 Chenopodium quinoa HOM05D000007 ORTHO05D000017 3.5e-09 67.0 275 24.7
A03p06770 Brassica napus HOM05D000171 ORTHO05D000101 4.6e-09 66.6 321 21.5
FAN28G1753 Fragaria x ananassa HOM05D003981 ORTHO05D003666 4.6e-09 66.6 306 23.2
Gorai.008G098100 Gossypium raimondii HOM05D000007 ORTHO05D000039 4.6e-09 66.6 330 22.4
Atru.chr1.119 Acer truncatum HOM05D000007 ORTHO05D000017 6.1e-09 66.2 284 22.2
Aqoxy3G04097 Aquilegia oxysepala HOM05D000007 ORTHO05D000676 6.1e-09 66.2 287 22.3
BcaB01g05100 Brassica carinata HOM05D000458 ORTHO05D000101 6.1e-09 66.2 321 21.5
C03p07750 Brassica napus HOM05D000458 ORTHO05D000101 6.1e-09 66.2 321 21.5
BolC3t13276H Brassica oleracea HOM05D000171 ORTHO05D000101 6.1e-09 66.2 321 21.5
COL.COLO4_12256 Corchorus olitorius HOM05D000007 ORTHO05D000039 6.1e-09 66.2 330 23.0
FvH4_3g39980 Fragaria vesca HOM05D000007 ORTHO05D005026 6.1e-09 66.2 243 23.5
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 6.1e-09 66.2 278 24.1
ATR0736G026 Amborella trichopoda HOM05D012411 ORTHO05D011070 7.9e-09 65.9 304 25.7
Cc00_g02930 Coffea canephora HOM05D000007 ORTHO05D000039 1.0e-08 65.5 275 22.2
FAN16G2291 Fragaria x ananassa HOM05D000007 ORTHO05D005026 1.0e-08 65.5 242 24.4
PGR119G0249 Punica granatum HOM05D000171 ORTHO05D000101 1.0e-08 65.5 267 24.0
Sc05g0008370 Simmondsia chinensis HOM05D000007 ORTHO05D000017 1.0e-08 65.5 299 24.1
Actinidia18974 Actinidia chinensis HOM05D000007 ORTHO05D008819 1.3e-08 65.1 284 27.1
Haze_06415 Corylus avellana HOM05D000007 ORTHO05D000039 1.3e-08 65.1 299 25.4
Cfa000452 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.8e-08 64.7 306 23.2
Cfa007562 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.8e-08 64.7 303 22.4
Duzib268G0526 Durio zibethinus HOM05D000007 ORTHO05D000017 1.8e-08 64.7 294 23.5
FvH4_1g00691 Fragaria vesca HOM05D003981 ORTHO05D003666 2.3e-08 64.3 306 22.9
HanXRQChr15g0467411 Helianthus annuus HOM05D000007 ORTHO05D000039 2.3e-08 64.3 295 24.7
Peaxi162Scf00698g00012 Petunia axillaris HOM05D000007 ORTHO05D000017 2.3e-08 64.3 288 19.4
CSS0003262 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 3.0e-08 63.9 324 23.1
AUR62012800 Chenopodium quinoa HOM05D000007 ORTHO05D026984 3.0e-08 63.9 269 23.0
CARHR043700 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.9e-08 63.5 224 25.4
Medtr0128s0070 Medicago truncatula HOM05D000007 ORTHO05D000017 3.9e-08 63.5 291 23.4
Solyc09g091680.1 Solanum lycopersicum HOM05D000007 ORTHO05D014560 3.9e-08 63.5 297 22.9
PGSC0003DMG400040613 Solanum tuberosum HOM05D000007 ORTHO05D000017 3.9e-08 63.5 291 24.7
TAR624G0469 Trochodendron aralioides HOM05D000007 ORTHO05D000521 3.9e-08 63.5 251 24.3
Peaxi162Scf01070g00125 Petunia axillaris HOM05D000007 ORTHO05D000017 5.1e-08 63.2 248 25.0
Rhsim04G0040700 Rhododendron simsii HOM05D000007 ORTHO05D000521 5.1e-08 63.2 303 21.5
Cc06_g09830 Coffea canephora HOM05D000007 ORTHO05D000017 6.7e-08 62.8 311 21.2
Lj2P928T12 Lonicera japonica HOM05D000007 ORTHO05D000017 6.7e-08 62.8 291 24.7
Lj2P943T5 Lonicera japonica HOM05D000007 ORTHO05D000017 6.7e-08 62.8 291 24.7
CAN.G1270.6 Capsicum annuum HOM05D007726 ORTHO05D008819 8.7e-08 62.4 292 23.6
ECA232G4348 Erigeron canadensis HOM05D000007 ORTHO05D000017 8.7e-08 62.4 341 24.6
FAN11G0170 Fragaria x ananassa HOM05D000007 ORTHO05D005026 8.7e-08 62.4 246 23.6
Gohir.A05G369700 Gossypium hirsutum HOM05D000007 ORTHO05D000039 8.7e-08 62.4 318 23.0
Rhsim11G0104200 Rhododendron simsii HOM05D007560 ORTHO05D005947 8.7e-08 62.4 293 24.6
Aa31LG11G6230 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.1e-07 62.0 298 24.2
Ciclev10030174m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.1e-07 62.0 295 25.8
PSO170G3398 Papaver somniferum HOM05D004049 ORTHO05D004496 1.1e-07 62.0 305 23.9
ATR1096G018 Amborella trichopoda HOM05D012411 ORTHO05D011070 1.5e-07 61.6 163 27.0
FAN23G2883 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.5e-07 61.6 241 26.6
Nitab4.5_0000059g0620 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.5e-07 61.6 286 22.4
Aa31LG6G12190 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.9e-07 61.2 295 21.7
ATR1136G199 Amborella trichopoda HOM05D011842 ORTHO05D011366 1.9e-07 61.2 188 28.7
CARHR182090 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.9e-07 61.2 293 26.3
COL.COLO4_07575 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.9e-07 61.2 311 21.9
Thhalv10012070m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.9e-07 61.2 302 22.2
Cfa000449 Carpinus fangiana HOM05D000007 ORTHO05D000039 2.5e-07 60.8 307 23.5
Haze_10234 Corylus avellana HOM05D000007 ORTHO05D000039 2.5e-07 60.8 306 24.2
Migut.C01272 Erythranthe guttata HOM05D007726 ORTHO05D008819 2.5e-07 60.8 363 23.4
RcHm_v2.0_Chr3g0475411 Rosa chinensis HOM05D000007 ORTHO05D000017 2.5e-07 60.8 295 25.4
Actinidia35051 Actinidia chinensis HOM05D000007 ORTHO05D007631 3.3e-07 60.5 272 23.2
Aqoxy2G00864 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 3.3e-07 60.5 303 22.8
CARHR030870 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.3e-07 60.5 168 27.4
AUR62021851 Chenopodium quinoa HOM05D000007 ORTHO05D000017 3.3e-07 60.5 271 22.5
Dinv01180 Davidia involucrata HOM05D000007 ORTHO05D000521 3.3e-07 60.5 283 24.4
Glyma.19G252100 Glycine max HOM05D003005 ORTHO05D004170 3.3e-07 60.5 394 21.1
Lj1C663T4 Lonicera japonica HOM05D000007 ORTHO05D000039 3.3e-07 60.5 167 31.7
PGR119G1883 Punica granatum HOM05D000171 ORTHO05D000101 3.3e-07 60.5 285 25.3
ATR0796G048 Amborella trichopoda HOM05D028407 ORTHO05D011070 4.3e-07 60.1 319 24.8
AL1G45230 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.3e-07 60.1 217 24.9
COL.COLO4_37366 Corchorus olitorius HOM05D000664 ORTHO05D000491 4.3e-07 60.1 278 22.3
HanXRQChr03g0066051 Helianthus annuus HOM05D000007 ORTHO05D000017 4.3e-07 60.1 126 31.7
EL10Ac8g20197 Beta vulgaris HOM05D000007 ORTHO05D026984 5.7e-07 59.7 209 23.0
BraA03t10365Z Brassica rapa HOM05D000171 ORTHO05D000101 5.7e-07 59.7 315 25.4
Medtr0128s0020 Medicago truncatula HOM05D000007 ORTHO05D000017 5.7e-07 59.7 291 23.0
Rhsim13G0145100 Rhododendron simsii HOM05D000007 ORTHO05D000017 5.7e-07 59.7 289 21.8
Sp1g27840 Schrenkiella parvula HOM05D000171 ORTHO05D000101 5.7e-07 59.7 298 24.2
AL3G17110 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 7.4e-07 59.3 331 23.6
AL1G53100 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 9.7e-07 58.9 290 23.4
Cfa000453 Carpinus fangiana HOM05D000007 ORTHO05D000039 9.7e-07 58.9 310 24.5
Lj1C663T3 Lonicera japonica HOM05D000007 ORTHO05D000039 9.7e-07 58.9 167 29.3
Lj3A538T48 Lonicera japonica HOM05D000007 ORTHO05D000017 9.7e-07 58.9 285 21.1
Cfa000427 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.3e-06 58.5 166 27.1
Cfa000500 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.3e-06 58.5 170 28.2
Cfa007611 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.3e-06 58.5 191 23.0
Migut.M00038 Erythranthe guttata HOM05D000007 ORTHO05D000521 1.3e-06 58.5 180 24.4
Peaxi162Scf00231g00028 Petunia axillaris HOM05D000007 ORTHO05D000017 1.3e-06 58.5 350 21.4
BcaB01g04693 Brassica carinata HOM05D000171 ORTHO05D000101 1.6e-06 58.2 371 22.9
A03p10530 Brassica napus HOM05D000171 ORTHO05D000101 1.6e-06 58.2 315 25.4
Ciclev10013838m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.6e-06 58.2 324 22.8
DCAR_019224 Daucus carota HOM05D000007 ORTHO05D000017 1.6e-06 58.2 318 25.2
Lj2P693T12 Lonicera japonica HOM05D000007 ORTHO05D000017 1.6e-06 58.2 292 22.6
PSO063G2625 Papaver somniferum HOM05D000007 ORTHO05D000676 1.6e-06 58.2 275 23.6
Sabra16G0310700 Salix brachista HOM05D000007 ORTHO05D000101 1.6e-06 58.2 294 23.8
PGSC0003DMG400022858 Solanum tuberosum HOM05D000007 ORTHO05D000017 1.6e-06 58.2 280 21.4
Aa31LG11G6190 Aethionema arabicum HOM05D000171 ORTHO05D000101 2.2e-06 57.8 291 21.6
Aa31LG6G10870 Aethionema arabicum HOM05D000171 ORTHO05D000101 2.2e-06 57.8 292 22.3
BcaB02g09153 Brassica carinata HOM05D000171 ORTHO05D000101 2.2e-06 57.8 298 23.8
Ciclev10006995m.g Citrus clementina HOM05D000007 ORTHO05D000017 2.2e-06 57.8 203 23.2
Haze_06492 Corylus avellana HOM05D000007 ORTHO05D000039 2.2e-06 57.8 250 25.6
Dinv06198 Davidia involucrata HOM05D000007 ORTHO05D000039 2.2e-06 57.8 179 27.4
Glyma.03G254500 Glycine max HOM05D003005 ORTHO05D004170 2.2e-06 57.8 390 21.3
Nitab4.5_0002389g0090 Nicotiana tabacum HOM05D007726 ORTHO05D008819 2.2e-06 57.8 270 21.5
ATR1134G109 Amborella trichopoda HOM05D041856 ORTHO05D011070 2.8e-06 57.4 188 28.2
Carub.0001s2948 Capsella rubella HOM05D000171 ORTHO05D000101 2.8e-06 57.4 350 22.6
COL.COLO4_18783 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.8e-06 57.4 291 23.4
ECA234G2623 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.8e-06 57.4 322 22.0
RcHm_v2.0_Chr5g0072021 Rosa chinensis HOM05D000007 ORTHO05D005026 2.8e-06 57.4 255 22.0
PGSC0003DMG400027870 Solanum tuberosum HOM05D000007 ORTHO05D000017 2.8e-06 57.4 340 22.4
Aa31LG11G6320 Aethionema arabicum HOM05D000171 ORTHO05D000101 3.7e-06 57.0 299 22.7
Cfa000428 Carpinus fangiana HOM05D000007 ORTHO05D000039 3.7e-06 57.0 283 22.3
Duzib138G1139 Durio zibethinus HOM05D000007 ORTHO05D000521 3.7e-06 57.0 278 20.1
FAN26G1843 Fragaria x ananassa HOM05D000001 ORTHO05D009432 3.7e-06 57.0 241 24.5
Nn2g13281 Nelumbo nucifera HOM05D000007 ORTHO05D000017 3.7e-06 57.0 295 24.4
Nitab4.5_0000217g0110 Nicotiana tabacum HOM05D000007 ORTHO05D000039 3.7e-06 57.0 264 25.4
Aa31LG1G6310 Aethionema arabicum HOM05D000171 ORTHO05D000101 4.8e-06 56.6 294 21.8
EL10Ac8g20199 Beta vulgaris HOM05D000007 ORTHO05D026984 4.8e-06 56.6 212 23.1
CiPaw.03G025900 Carya illinoinensis HOM05D000007 ORTHO05D000039 4.8e-06 56.6 293 22.2
CiPaw.07G037900 Carya illinoinensis HOM05D000007 ORTHO05D000017 4.8e-06 56.6 268 22.4
Cc00_g01300 Coffea canephora HOM05D000007 ORTHO05D000017 4.8e-06 56.6 293 22.2
Duzib187G1873 Durio zibethinus HOM05D000007 ORTHO05D000039 4.8e-06 56.6 328 21.6
Atru.chr3.1786 Acer truncatum HOM05D000007 ORTHO05D000017 6.3e-06 56.2 192 22.4
BcaC01g06613 Brassica carinata HOM05D000171 ORTHO05D000101 6.3e-06 56.2 296 23.6
PSO017G5398 Papaver somniferum HOM05D000007 ORTHO05D000676 6.3e-06 56.2 214 23.4
Aqoxy2G01074 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 8.2e-06 55.8 223 26.9
PSO675G8644 Papaver somniferum HOM05D000007 ORTHO05D000017 8.2e-06 55.8 297 22.2


User provided reference genes

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