Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 0.0e+00 1340.9 683 100.0
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 5.9e-249 864.4 732 64.5
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.2e-244 850.1 727 64.4
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 9.5e-239 830.5 729 64.5
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 1.1e-231 807.0 727 62.4
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 3.3e-231 805.4 728 63.0
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 7.3e-231 804.3 728 63.0
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 1.7e-227 793.1 730 62.1
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 3.7e-227 792.0 722 61.4
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 5.4e-226 788.1 727 60.7
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 9.2e-226 787.3 732 61.2
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 1.6e-225 786.6 728 61.0
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 3.5e-225 785.4 728 60.7
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 3.5e-225 785.4 721 61.6
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 1.0e-224 783.9 728 62.1
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 3.9e-224 781.9 722 60.8
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 5.1e-224 781.6 727 60.8
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 8.6e-224 780.8 719 61.6
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.5e-223 779.2 725 61.9
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 3.3e-223 778.9 728 61.0
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 7.3e-223 777.7 728 60.4
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 1.8e-221 773.1 729 60.9
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 2.3e-221 772.7 731 59.4
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 4.0e-221 771.9 727 60.4
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 1.2e-220 770.4 726 60.3
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.0e-220 769.6 723 60.2
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 2.6e-220 769.2 727 59.8
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 4.4e-220 768.5 690 62.9
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 1.7e-219 766.5 726 59.5
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 6.4e-219 764.6 741 59.0
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.4e-218 763.5 729 59.1
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 7.1e-218 761.1 690 62.5
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.2e-217 760.4 726 60.1
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 2.1e-217 759.6 728 59.8
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 3.5e-217 758.8 717 60.1
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 7.8e-217 757.7 726 59.6
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 1.3e-216 756.9 726 59.4
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 3.0e-216 755.7 723 58.4
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.9e-216 755.4 707 61.0
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 5.1e-216 755.0 730 59.3
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 6.6e-216 754.6 723 59.8
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 6.6e-216 754.6 723 58.8
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 1.9e-215 753.1 706 61.2
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.5e-215 752.7 728 58.7
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 2.5e-215 752.7 724 59.5
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 3.3e-215 752.3 717 61.8
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 4.3e-215 751.9 726 59.2
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 4.3e-215 751.9 707 60.5
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 5.6e-215 751.5 725 59.3
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 9.6e-215 750.7 728 59.6
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.2e-214 750.4 624 65.2
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.1e-214 749.6 728 58.7
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 2.1e-214 749.6 730 59.9
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.8e-214 749.2 728 58.9
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.8e-214 749.2 745 58.0
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 2.8e-214 749.2 727 59.3
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.6e-214 748.8 745 58.0
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 3.6e-214 748.8 726 58.8
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 6.2e-214 748.0 725 58.1
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 8.1e-214 747.7 738 58.5
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 8.1e-214 747.7 716 58.8
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.1e-213 747.3 724 58.8
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 2.4e-213 746.1 787 56.4
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 2.4e-213 746.1 729 58.4
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 3.1e-213 745.7 724 57.9
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 4.0e-213 745.3 728 58.1
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 5.2e-213 745.0 725 58.1
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 1.5e-212 743.4 728 58.7
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 2.0e-212 743.0 724 57.9
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 5.8e-212 741.5 741 58.0
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 9.9e-212 740.7 727 57.9
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.3e-211 740.3 689 61.1
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 1.7e-211 740.0 724 58.1
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 2.2e-211 739.6 724 58.0
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 2.2e-211 739.6 747 57.8
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 6.4e-211 738.0 745 57.2
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 8.4e-211 737.6 717 57.9
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 8.4e-211 737.6 734 58.4
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 1.1e-210 737.3 724 57.9
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.4e-210 736.9 752 58.0
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 1.4e-210 736.9 720 58.2
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 7.1e-210 734.6 724 57.7
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 7.1e-210 734.6 732 58.2
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 4.6e-209 731.9 723 57.7
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 6.0e-209 731.5 728 59.1
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 6.0e-209 731.5 728 57.8
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 7.8e-209 731.1 727 58.9
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 2.3e-208 729.6 691 59.8
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 2.3e-208 729.6 729 57.5
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 3.0e-208 729.2 732 57.4
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 3.9e-208 728.8 729 57.5
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 6.6e-208 728.0 724 57.3
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 1.1e-207 727.2 729 57.9
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.1e-207 727.2 728 58.1
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 1.5e-207 726.9 728 58.0
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 3.3e-207 725.7 728 58.1
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 3.3e-207 725.7 709 59.5
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 9.6e-207 724.2 719 58.3
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 1.3e-206 723.8 722 58.4
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.6e-206 723.4 728 57.6
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 2.8e-206 722.6 728 56.6
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 3.6e-206 722.2 728 56.6
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 4.8e-206 721.8 726 57.4
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 4.0e-205 718.8 732 57.5
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 4.0e-205 718.8 726 57.4
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 9.0e-205 717.6 728 57.8
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 1.7e-203 713.4 721 56.3
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 4.9e-203 711.8 728 58.4
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 4.9e-203 711.8 731 57.6
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 8.4e-203 711.1 726 58.1
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 1.4e-202 710.3 726 56.7
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.5e-201 705.7 717 56.6
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 4.6e-201 705.3 693 59.2
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 3.0e-200 702.6 717 57.7
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.9e-200 702.2 723 57.4
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 1.1e-199 700.7 660 59.1
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 2.8e-198 696.0 746 55.8
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 4.8e-198 695.3 727 55.6
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 1.1e-197 694.1 716 57.5
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.8e-197 693.3 718 57.1
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.8e-197 693.3 718 57.1
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 2.4e-197 693.0 730 56.4
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 6.9e-197 691.4 719 56.5
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 9.0e-197 691.0 732 56.6
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 1.2e-196 690.6 727 56.5
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 2.9e-195 686.0 690 58.3
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 1.4e-194 683.7 726 56.1
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.0e-192 677.6 744 55.1
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.5e-191 673.7 540 67.2
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 6.2e-190 668.3 721 56.2
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 2.2e-187 659.8 737 53.6
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.9e-186 656.8 424 79.2
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 3.9e-184 649.0 772 52.2
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 1.2e-180 637.5 736 52.2
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 2.9e-179 632.9 645 57.5
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 4.8e-174 615.5 732 52.9
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 1.4e-168 597.4 785 48.7
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 2.0e-151 540.4 373 75.6
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 5.0e-147 525.8 613 52.2
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 1.1e-146 524.6 709 47.8
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 1.5e-143 514.2 736 46.6
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 2.4e-141 506.9 553 56.2
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.3e-136 490.3 603 48.9
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.7e-132 476.9 612 47.5
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.7e-132 476.9 612 47.5
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 6.6e-131 472.2 606 47.7
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 6.8e-120 435.6 304 74.7
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.7e-118 431.0 473 51.0
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 1.4e-109 401.4 425 55.3
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 1.3e-107 394.8 351 62.4
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 1.6e-89 334.7 507 41.4
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 6.2e-81 306.2 442 45.2
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 5.3e-80 303.1 183 84.2
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 3.8e-78 297.0 274 60.6
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 5.5e-77 293.1 265 63.0
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 1.1e-72 278.9 259 60.6
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 4.0e-72 276.9 416 42.1
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 7.6e-71 272.7 348 48.9
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.3e-70 271.9 571 37.3
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 3.4e-55 220.7 587 34.9
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 3.2e-45 187.6 442 34.4
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 4.8e-41 173.7 193 52.8
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 1.6e-36 158.7 632 26.6
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.8e-35 155.2 131 64.1
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 2.0e-34 151.8 102 71.6
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 3.1e-32 144.4 96 72.9
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 4.1e-32 144.1 87 78.2
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 8.8e-27 126.3 73 87.7
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 2.3e-19 101.7 189 37.0
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 5.2e-19 100.5 51 90.2
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 2.4e-16 91.7 50 88.0
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 6.6e-14 83.6 140 42.1
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 4.3e-13 80.9 84 57.1
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 6.1e-12 77.0 53 71.7
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 8.0e-12 76.6 56 62.5
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 8.0e-12 76.6 56 62.5
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.8e-11 75.5 222 32.9
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 1.5e-10 72.4 154 35.1
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 9.8e-10 69.7 60 58.3
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 1.3e-09 69.3 56 60.7
VMungo1127G0394 Vigna mungo HOM05D003681 ORTHO05D004703 1.7e-09 68.9 88 46.6
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 5.4e-08 63.9 298 27.9
VMungo0720G1637 Vigna mungo HOM05D003681 ORTHO05D437941 8.6e-06 56.6 86 43.0


User provided reference genes

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