Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 0.0e+00 1139.4 637 100.0
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 2.7e-134 483.4 630 50.2
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 2.9e-125 453.4 624 45.0
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.4e-122 444.5 627 47.7
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 1.4e-119 434.5 640 47.5
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 2.0e-118 430.6 621 46.2
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 1.1e-116 424.9 638 45.3
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 1.5e-116 424.5 638 45.1
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 7.3e-116 422.2 663 45.9
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 2.1e-115 420.6 633 44.1
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 1.8e-114 417.5 622 46.5
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 1.5e-113 414.5 619 47.0
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.0e-113 414.1 633 46.1
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 5.8e-113 412.5 637 44.6
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 7.5e-113 412.1 621 42.4
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 9.8e-113 411.8 622 45.5
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 2.2e-112 410.6 617 42.3
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 3.7e-112 409.8 617 42.1
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.1e-111 408.3 641 41.3
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 1.1e-111 408.3 623 43.0
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 3.2e-111 406.8 634 45.7
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 4.1e-111 406.4 619 43.0
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 4.6e-110 402.9 619 42.8
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 7.8e-110 402.1 626 45.7
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 1.3e-109 401.4 633 44.1
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 3.0e-109 400.2 645 43.9
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 5.0e-109 399.4 629 44.0
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 5.0e-109 399.4 623 43.5
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 8.6e-109 398.7 643 39.5
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 1.9e-108 397.5 626 46.6
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 1.9e-108 397.5 624 44.6
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 3.3e-108 396.7 629 44.4
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 3.3e-108 396.7 629 43.9
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 1.2e-107 394.8 663 41.2
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 8.1e-107 392.1 607 46.1
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 1.1e-106 391.7 628 43.9
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 6.8e-106 389.0 629 43.4
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 8.9e-106 388.7 632 42.1
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 1.5e-105 387.9 623 41.7
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 9.8e-105 385.2 650 42.3
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 1.7e-104 384.4 628 43.2
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 1.1e-103 381.7 619 42.0
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 1.1e-103 381.7 615 42.6
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 7.8e-102 375.6 632 43.4
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 3.0e-101 373.6 617 42.0
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 9.5e-100 368.6 624 40.5
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 1.6e-99 367.9 625 40.0
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.0e-98 363.2 634 40.2
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 5.2e-98 362.8 662 42.3
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 6.8e-98 362.5 491 47.0
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.4e-97 360.1 623 39.8
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 4.4e-97 359.8 614 42.8
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 5.8e-97 359.4 634 40.1
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 7.6e-97 359.0 622 41.8
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 9.9e-97 358.6 619 43.5
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 9.9e-97 358.6 630 43.8
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 1.3e-96 358.2 556 45.7
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 2.2e-96 357.5 611 41.2
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 2.2e-96 357.5 611 41.9
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 4.9e-96 356.3 641 42.9
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 4.9e-96 356.3 613 41.3
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 8.4e-96 355.5 639 42.3
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.1e-95 355.1 646 40.2
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 5.4e-95 352.8 639 38.7
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 7.1e-95 352.4 631 41.7
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 9.2e-95 352.1 578 43.4
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 2.1e-94 350.9 449 47.7
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 3.5e-94 350.1 631 42.0
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 8.6e-93 345.5 690 37.8
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.9e-92 344.4 634 37.7
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 8.1e-91 339.0 634 41.3
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 5.2e-90 336.3 625 38.6
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.2e-89 335.1 615 40.5
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 1.3e-88 331.6 624 41.3
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 8.4e-88 328.9 610 40.2
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.2e-86 325.1 618 40.8
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 1.6e-86 324.7 611 41.1
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 3.0e-85 320.5 637 41.0
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 6.6e-85 319.3 624 41.5
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.9e-84 317.8 622 42.1
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 4.3e-84 316.6 469 44.8
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 4.3e-84 316.6 616 38.1
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.3e-83 315.1 656 35.8
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 6.2e-83 312.8 620 35.6
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 1.8e-82 311.2 609 41.5
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 5.3e-82 309.7 636 37.9
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 9.0e-82 308.9 613 40.9
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 3.4e-81 307.0 546 38.8
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 1.7e-80 304.7 564 40.4
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 3.8e-80 303.5 650 35.4
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 2.4e-79 300.8 304 47.0
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 2.7e-78 297.4 545 41.5
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 2.3e-77 294.3 303 45.9
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 3.9e-77 293.5 319 44.5
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 1.1e-76 292.0 307 48.9
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 1.5e-76 291.6 622 38.1
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 2.8e-75 287.3 429 41.5
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 5.5e-71 273.1 619 37.2
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 7.9e-70 269.2 254 52.0
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 8.7e-69 265.8 253 51.4
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.4e-65 253.8 234 52.6
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 1.0e-64 252.3 508 36.0
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 4.9e-64 250.0 638 35.3
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 4.2e-63 246.9 545 38.2
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 7.1e-63 246.1 271 49.4
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 1.6e-62 245.0 210 56.7
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 6.7e-61 239.6 566 34.1
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 8.2e-59 232.6 637 30.1
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 4.1e-58 230.3 705 32.9
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 7.6e-57 226.1 231 48.9
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 9.3e-55 219.2 278 45.0
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 1.5e-52 211.8 453 40.0
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 8.5e-48 196.1 174 53.4
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.9e-47 194.9 246 43.1
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 5.5e-47 193.4 233 44.2
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.0e-45 189.1 466 31.8
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.5e-41 173.7 466 33.3
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 1.3e-40 172.2 174 49.4
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.4e-39 168.7 152 55.3
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 9.4e-39 166.0 166 46.4
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 2.4e-34 151.4 317 29.0
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 1.0e-32 146.0 119 55.5
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 5.0e-32 143.7 169 39.1
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 1.4e-29 135.6 110 56.4
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 2.6e-28 131.3 310 31.9
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 7.5e-28 129.8 233 39.1
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 8.2e-27 126.3 297 30.3
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 7.0e-26 123.2 141 47.5
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.2e-24 118.2 243 37.4
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 2.9e-24 117.9 484 30.8
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 3.2e-23 114.4 196 36.2
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 4.2e-23 114.0 227 37.0
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 9.4e-23 112.8 89 56.2
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.6e-22 112.1 244 37.3
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 1.0e-21 109.4 185 36.8
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 1.4e-21 109.0 173 36.4
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 3.4e-20 104.4 262 39.3
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 9.8e-20 102.8 244 34.4
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.7e-19 102.1 86 57.0
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.8e-19 100.5 118 47.5
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 1.4e-18 99.0 134 51.5
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.8e-18 98.6 390 33.3
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 1.6e-17 95.5 81 54.3
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 4.2e-15 87.4 290 29.0
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 9.5e-15 86.3 223 34.1
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 8.0e-14 83.2 107 43.9
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 5.2e-13 80.5 74 55.4
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 8.8e-13 79.7 231 29.4
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 1.5e-12 79.0 119 36.1
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.4e-12 77.8 76 47.4
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.7e-11 75.5 143 34.3
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 6.3e-11 73.6 204 30.9
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 6.3e-11 73.6 165 33.3
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 8.3e-11 73.2 249 34.5
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 2.4e-10 71.6 175 37.7
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 1.6e-09 68.9 52 57.7
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 1.6e-09 68.9 51 60.8
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 2.0e-09 68.6 194 32.0
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.8e-08 64.3 66 53.0
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 5.0e-08 63.9 194 28.4
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 8.6e-08 63.2 185 28.6
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 8.6e-08 63.2 185 28.6
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 1.1e-07 62.8 184 28.3
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 1.1e-07 62.8 196 30.6


User provided reference genes

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