Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 0.0e+00 1199.1 617 100.0
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 3.9e-284 981.1 630 79.5
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 3.9e-284 981.1 615 80.2
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 8.8e-284 979.9 616 80.0
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 2.0e-283 978.8 615 79.8
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 5.9e-272 940.6 615 75.9
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 5.9e-272 940.6 616 76.6
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 2.2e-271 938.7 616 76.9
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 1.2e-269 932.9 615 76.3
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 2.7e-269 931.8 615 76.1
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 6.1e-269 930.6 616 77.1
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 1.8e-268 929.1 616 75.8
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 3.0e-268 928.3 616 75.6
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 6.7e-268 927.2 616 76.1
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 6.7e-268 927.2 616 75.6
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 2.0e-267 925.6 615 75.3
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 3.3e-267 924.9 616 75.0
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 5.7e-267 924.1 616 75.6
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.3e-266 922.9 615 75.4
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.7e-266 922.5 615 75.6
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 3.7e-266 921.4 614 75.6
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 4.8e-266 921.0 616 75.2
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 4.8e-266 921.0 615 75.3
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 6.3e-266 920.6 616 75.0
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 1.4e-265 919.5 616 75.0
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.8e-265 919.1 615 75.4
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 9.1e-265 916.8 617 75.7
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 2.6e-264 915.2 616 75.0
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 4.5e-264 914.4 639 72.6
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.5e-263 910.2 626 73.3
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 1.9e-262 909.1 615 74.5
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 3.2e-262 908.3 617 74.1
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 4.2e-262 907.9 617 74.6
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 5.5e-262 907.5 615 74.3
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 5.5e-262 907.5 615 74.8
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 1.2e-261 906.4 617 74.2
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 3.6e-261 904.8 615 74.1
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 3.6e-261 904.8 615 74.0
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 3.6e-261 904.8 615 73.5
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 6.1e-261 904.0 615 74.3
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.0e-260 903.3 625 73.4
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 2.3e-260 902.1 616 72.9
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 3.0e-260 901.7 616 74.5
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 5.2e-260 901.0 616 73.5
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 5.2e-260 901.0 616 72.7
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 8.8e-260 900.2 615 74.1
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 2.6e-259 898.7 615 73.5
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 7.5e-259 897.1 615 72.7
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 7.5e-259 897.1 615 73.8
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 1.3e-258 896.3 618 72.7
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 2.2e-258 895.6 616 73.1
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 8.3e-258 893.6 618 72.8
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 2.4e-257 892.1 615 73.5
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.2e-256 889.8 616 72.7
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 2.0e-256 889.0 648 70.7
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 2.9e-255 885.2 617 72.6
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 2.9e-255 885.2 617 72.6
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 7.2e-254 880.6 654 69.1
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 2.1e-253 879.0 615 72.7
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.6e-253 878.2 616 72.2
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 4.7e-253 877.9 611 72.2
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 6.1e-253 877.5 617 73.3
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 2.3e-252 875.5 615 72.0
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 1.2e-251 873.2 616 71.1
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.2e-251 873.2 751 62.3
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 2.0e-251 872.5 610 71.8
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 2.0e-251 872.5 622 70.6
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 7.5e-251 870.5 683 67.3
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 3.1e-249 865.1 622 70.1
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 4.1e-249 864.8 615 70.1
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 2.7e-248 862.1 639 70.9
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 1.1e-246 856.7 642 68.2
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 3.3e-246 855.1 615 71.1
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 7.2e-246 854.0 615 69.4
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.2e-245 853.2 615 70.2
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 3.0e-244 848.6 615 69.4
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 6.8e-244 847.4 617 67.6
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.0e-243 845.9 616 69.5
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 9.8e-243 843.6 615 68.9
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 2.8e-242 842.0 575 73.9
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 1.1e-241 840.1 575 72.9
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 8.0e-237 823.9 541 76.3
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 3.7e-234 815.1 615 67.5
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 8.3e-234 813.9 615 67.3
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 2.0e-232 809.3 622 65.4
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.7e-232 808.9 615 67.2
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 7.8e-232 807.4 600 67.7
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 4.7e-229 798.1 630 66.2
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 6.2e-229 797.7 602 66.9
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.5e-227 793.1 615 67.0
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 5.8e-227 791.2 615 64.7
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 5.6e-222 774.6 576 69.1
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 7.3e-222 774.2 517 74.7
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.7e-221 771.5 622 65.3
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 2.0e-219 766.1 517 73.9
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 2.6e-211 739.2 511 74.8
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 3.3e-206 722.2 646 56.3
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.8e-197 692.6 469 73.1
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 7.6e-195 684.5 553 66.2
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 6.0e-192 674.9 445 76.6
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.2e-186 656.4 558 62.5
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.3e-159 566.6 617 48.9
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 6.7e-151 538.5 359 76.6
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 4.4e-150 535.8 617 46.4
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 7.7e-147 525.0 358 75.7
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 5.2e-143 512.3 493 59.8
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 6.8e-143 511.9 598 50.7
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 6.3e-141 505.4 340 77.6
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 1.2e-139 501.1 364 69.8
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 1.7e-138 497.3 513 50.1
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 7.0e-132 475.3 390 64.6
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-100 371.7 369 58.0
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 3.5e-99 366.7 281 68.7
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 1.7e-93 347.8 457 48.8
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 9.3e-76 288.9 188 75.5
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.4e-68 265.0 175 73.1
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 5.5e-68 263.1 171 75.4
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.5e-53 212.6 147 72.8
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 8.5e-53 212.6 145 72.4
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.8e-50 204.9 139 74.8
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.1e-49 202.2 134 76.9
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 8.2e-48 196.1 117 78.6
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 1.9e-44 184.9 122 75.4
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.0e-42 179.1 150 60.0
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.8e-42 178.3 105 77.1
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 2.2e-37 161.4 106 69.8
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.2e-35 155.6 100 77.0
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 7.5e-33 146.4 178 46.1
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 1.9e-28 131.7 106 59.4
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 2.0e-25 121.7 109 59.6
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 1.4e-23 115.5 86 69.8
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.0e-22 111.7 86 67.4
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 7.7e-22 109.8 72 75.0
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 3.6e-19 100.9 59 69.5
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 3.6e-19 100.9 59 69.5
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 1.2e-17 95.9 104 58.7
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 3.4e-17 94.4 59 67.8
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 3.4e-17 94.4 59 67.8
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 4.4e-17 94.0 58 69.0
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 4.9e-16 90.5 76 61.8
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 1.2e-14 85.9 56 73.2
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 1.6e-14 85.5 49 75.5
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 1.7e-13 82.0 56 57.1
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 8.6e-13 79.7 44 81.8
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.3e-08 65.9 38 76.3
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 2.2e-08 65.1 80 45.0
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 4.9e-08 63.9 51 51.0
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.1e-07 62.8 48 68.8
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 4.6e-06 57.4 34 76.5


User provided reference genes

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