Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 6.5e-165 583.9 287 100.0
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 3.9e-69 265.8 295 49.8
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 7.4e-68 261.5 302 47.0
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 1.8e-66 256.9 297 47.1
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.4e-66 256.5 306 47.7
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 9.0e-66 254.6 295 45.8
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 7.7e-65 251.5 295 46.4
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 1.7e-64 250.4 289 44.6
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 5.5e-63 245.4 278 45.7
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 7.2e-63 245.0 302 46.0
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 9.4e-63 244.6 286 46.9
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 9.4e-63 244.6 302 46.0
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 1.2e-62 244.2 300 43.0
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 2.1e-62 243.4 284 46.1
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 2.1e-62 243.4 297 44.4
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 2.1e-62 243.4 297 45.1
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 2.5e-60 236.5 276 46.7
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 5.7e-60 235.3 305 44.3
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.4e-60 235.0 303 42.6
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 1.3e-59 234.2 305 43.6
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 2.8e-59 233.0 287 44.3
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 1.1e-58 231.1 289 43.3
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.4e-58 230.7 280 43.9
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 1.8e-58 230.3 303 40.9
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 3.1e-58 229.6 300 44.3
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 5.3e-58 228.8 309 40.5
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 5.3e-58 228.8 330 41.5
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 1.2e-57 227.6 280 46.1
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 2.6e-57 226.5 271 45.8
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 3.4e-57 226.1 283 45.2
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 4.5e-57 225.7 308 44.5
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 4.5e-57 225.7 307 44.6
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 7.7e-57 224.9 288 42.7
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.0e-56 224.6 285 44.6
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 1.3e-56 224.2 289 42.6
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 2.9e-56 223.0 330 40.6
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 8.5e-56 221.5 287 43.2
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 8.5e-56 221.5 287 42.5
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 1.1e-55 221.1 290 42.4
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 1.1e-55 221.1 290 41.7
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 1.9e-55 220.3 288 42.7
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 2.5e-55 219.9 287 43.2
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 5.5e-55 218.8 306 41.8
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 7.2e-55 218.4 293 41.3
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 9.4e-55 218.0 273 44.7
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 2.7e-54 216.5 271 44.6
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 3.6e-54 216.1 309 42.1
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 7.9e-54 214.9 289 41.5
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 1.8e-53 213.8 295 42.0
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 5.1e-53 212.2 314 37.9
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 5.1e-53 212.2 275 42.5
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 5.1e-53 212.2 303 42.6
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 1.1e-52 211.1 289 40.8
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 1.1e-52 211.1 285 41.4
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 1.1e-52 211.1 289 40.8
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 1.1e-52 211.1 283 42.4
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 1.5e-52 210.7 280 41.1
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.0e-52 210.3 303 42.6
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 3.3e-52 209.5 286 40.6
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 1.7e-51 207.2 290 42.1
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 2.2e-51 206.8 303 43.2
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 3.7e-51 206.1 330 39.7
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 1.4e-50 204.1 253 46.6
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 1.8e-50 203.8 303 41.3
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.8e-50 203.8 296 40.2
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 2.4e-50 203.4 315 41.3
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 3.1e-50 203.0 243 45.7
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 2.9e-48 196.4 271 42.8
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 3.8e-48 196.1 297 39.4
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 3.8e-48 196.1 301 38.5
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 5.0e-48 195.7 311 40.8
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.5e-47 193.4 288 39.9
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 2.5e-47 193.4 285 37.5
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 4.2e-47 192.6 300 38.0
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.6e-46 190.7 284 39.8
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 3.6e-46 189.5 279 39.1
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 4.7e-46 189.1 279 39.1
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.8e-45 187.2 272 42.6
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 3.0e-45 186.4 315 39.0
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 3.9e-45 186.0 275 40.0
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 6.7e-45 185.3 293 38.6
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 1.1e-44 184.5 294 37.1
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.5e-44 184.1 319 38.9
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 4.4e-44 182.6 304 36.2
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 9.7e-44 181.4 276 38.4
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 9.7e-44 181.4 293 36.2
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 9.7e-44 181.4 293 36.2
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 2.2e-43 180.3 297 37.7
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 3.7e-43 179.5 295 36.6
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 6.3e-43 178.7 285 38.2
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 8.2e-43 178.3 288 36.8
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.1e-42 177.9 294 37.8
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 3.1e-42 176.4 288 37.2
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.2e-41 174.5 275 38.5
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 2.0e-41 173.7 299 36.1
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 7.7e-41 171.8 293 37.2
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 1.0e-40 171.4 404 30.9
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 1.3e-40 171.0 286 37.4
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 2.9e-40 169.9 284 35.2
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 3.8e-40 169.5 316 34.5
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 6.5e-40 168.7 274 40.1
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 6.5e-40 168.7 313 33.9
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 1.1e-39 167.9 148 52.0
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 2.1e-38 163.7 300 38.3
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.1e-38 163.7 325 37.2
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 1.0e-37 161.4 296 36.1
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 3.7e-35 152.9 272 37.1
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 1.0e-32 144.8 271 35.4
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 6.1e-30 135.6 223 39.9
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.4e-29 134.4 101 59.4
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.4e-29 134.4 229 38.0
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.8e-29 134.0 140 43.6
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 8.8e-29 131.7 85 68.2
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.7e-27 127.5 218 37.2
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 8.3e-27 125.2 120 46.7
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 9.1e-26 121.7 316 28.8
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 5.9e-25 119.0 226 38.1
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.3e-24 117.9 87 58.6
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.7e-24 117.5 101 53.5
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.1e-23 114.8 124 46.0
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.5e-23 114.4 85 58.8
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.8e-22 110.2 226 36.3
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 6.1e-22 109.0 101 52.5
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 6.6e-16 89.0 218 31.2
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 3.3e-15 86.7 108 50.0
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 4.3e-15 86.3 58 62.1
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 9.5e-15 85.1 190 32.6
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 6.8e-13 79.0 45 68.9
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 1.1e-07 61.6 33 84.8


User provided reference genes

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