Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0820G245 Amborella trichopoda HOM05D007852 ORTHO05D009916 2.5e-70 268.5 120 100.0
TAR626G0530 Trochodendron aralioides HOM05D007852 ORTHO05D009916 5.4e-12 74.7 45 64.4
Nn3g21053 Nelumbo nucifera HOM05D007852 ORTHO05D009916 7.0e-12 74.3 59 52.5
Hma1.2p1_1749F.1_g300710 Hydrangea macrophylla HOM05D007852 ORTHO05D009916 1.6e-11 73.2 45 62.2
Gohir.D06G206100 Gossypium hirsutum HOM05D007852 ORTHO05D009916 2.0e-11 72.8 57 49.1
Gorai.010G240500 Gossypium raimondii HOM05D007852 ORTHO05D009916 2.0e-11 72.8 57 49.1
Ciclev10018381m.g Citrus clementina HOM05D007852 ORTHO05D009916 2.7e-11 72.4 44 61.4
COL.COLO4_31211 Corchorus olitorius HOM05D007852 ORTHO05D009916 4.5e-11 71.6 45 60.0
MSTRG.16177 Avicennia marina HOM05D007852 ORTHO05D009916 1.3e-10 70.1 44 59.1
Gohir.A06G198800 Gossypium hirsutum HOM05D007852 ORTHO05D009916 1.7e-10 69.7 57 47.4
Oeu001067.1 Olea europaea HOM05D007852 ORTHO05D009916 1.7e-10 69.7 50 52.0
Ciclev10006937m.g Citrus clementina HOM05D007852 ORTHO05D009916 5.0e-10 68.2 44 59.1
VMungo0540G1707 Vigna mungo HOM05D007852 ORTHO05D009916 6.6e-10 67.8 62 40.3
Zm00001eb094410 Zea mays HOM05D007852 ORTHO05D009916 6.6e-10 67.8 44 56.8
Lj6g0024251 Lotus japonicus HOM05D007852 ORTHO05D009916 8.6e-10 67.4 89 36.0
Thecc.06G163700 Theobroma cacao HOM05D007852 ORTHO05D009916 8.6e-10 67.4 44 56.8
Migut.M00995 Erythranthe guttata HOM05D007852 ORTHO05D009916 1.1e-09 67.0 44 56.8
SGA_v2.0_scaffold1G00101 Striga asiatica HOM05D007852 ORTHO05D009916 1.5e-09 66.6 44 54.5
Ciclev10002903m.g Citrus clementina HOM05D007852 ORTHO05D009916 2.5e-09 65.9 44 54.5
Nitab4.5_0008572g0040 Nicotiana tabacum HOM05D007852 ORTHO05D009916 4.2e-09 65.1 62 45.2
Os01g0729500 Oryza sativa ssp. japonica HOM05D007852 ORTHO05D009916 4.2e-09 65.1 47 53.2
Potri.004G062700 Populus trichocarpa HOM05D007852 ORTHO05D009916 4.2e-09 65.1 44 54.5
GSVIVG01021272001 Vitis vinifera HOM05D007852 ORTHO05D009916 4.2e-09 65.1 49 53.1
Lalb_Chr18g0054901 Lupinus albus HOM05D007852 ORTHO05D009916 5.5e-09 64.7 49 44.9
Duzib235G0245 Durio zibethinus HOM05D007852 ORTHO05D009916 7.2e-09 64.3 42 57.1
TWI09G0702 Tripterygium wilfordii HOM05D007852 ORTHO05D009916 7.2e-09 64.3 44 56.8
FAN16G0821 Fragaria x ananassa HOM05D007852 ORTHO05D009916 9.5e-09 63.9 44 56.8
Glyma.08G120000 Glycine max HOM05D007852 ORTHO05D009916 1.2e-08 63.5 63 44.4
FAN21G2050 Fragaria x ananassa HOM05D007852 ORTHO05D009916 1.6e-08 63.2 44 56.8
Actinidia39528 Actinidia chinensis HOM05D007852 ORTHO05D009916 2.1e-08 62.8 47 57.4
Glyma.13G225200 Glycine max HOM05D007852 ORTHO05D009916 2.1e-08 62.8 55 41.8
RcHm_v2.0_Chr5g0011991 Rosa chinensis HOM05D007852 ORTHO05D009916 2.1e-08 62.8 44 56.8
QL05p050225 Quercus lobata HOM05D007852 ORTHO05D009916 2.8e-08 62.4 45 46.7
MELO3C017616.2 Cucumis melo HOM05D007852 ORTHO05D009916 4.7e-08 61.6 57 47.4
Prupe.4G068400 Prunus persica HOM05D007852 ORTHO05D009916 4.7e-08 61.6 56 44.6
arahy.Tifrunner.gnm1.ann1.4JXB6U Arachis hypogaea HOM05D007852 ORTHO05D009916 6.1e-08 61.2 60 41.7
DCAR_003974 Daucus carota HOM05D007852 ORTHO05D009916 6.1e-08 61.2 47 48.9
Medtr8g087660 Medicago truncatula HOM05D007852 ORTHO05D009916 8.0e-08 60.8 46 50.0
BcaB03g12179 Brassica carinata HOM05D007852 ORTHO05D009916 1.0e-07 60.5 49 51.0
Phvul.006G171300 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 1.0e-07 60.5 49 44.9
Dinv12735 Davidia involucrata HOM05D007852 ORTHO05D009916 1.4e-07 60.1 42 57.1
Sp1g25680 Schrenkiella parvula HOM05D007852 ORTHO05D009916 1.4e-07 60.1 54 46.3
Hund21452 Selenicereus undatus HOM05D007852 ORTHO05D009916 1.4e-07 60.1 44 52.3
Solyc02g071940.1 Solanum lycopersicum HOM05D007852 ORTHO05D009916 1.4e-07 60.1 49 49.0
Sopen02g020930 Solanum pennellii HOM05D007852 ORTHO05D009916 1.4e-07 60.1 51 47.1
PGSC0003DMG400028458 Solanum tuberosum HOM05D007852 ORTHO05D009916 1.4e-07 60.1 44 52.3
Atru.chr10.1525 Acer truncatum HOM05D007852 ORTHO05D009916 1.8e-07 59.7 53 43.4
Carub.0001s2803 Capsella rubella HOM05D007852 ORTHO05D009916 1.8e-07 59.7 44 54.5
Lalb_Chr15g0086451 Lupinus albus HOM05D007852 ORTHO05D009916 1.8e-07 59.7 61 37.7
Sed0006029 Sechium edule HOM05D007852 ORTHO05D009916 1.8e-07 59.7 52 48.1
Sc05g0006790 Simmondsia chinensis HOM05D007852 ORTHO05D009916 1.8e-07 59.7 45 48.9
CARHR029160 Cardamine hirsuta HOM05D007852 ORTHO05D009916 2.3e-07 59.3 44 52.3
A07p10220 Brassica napus HOM05D007852 ORTHO05D009916 3.0e-07 58.9 55 49.1
AL1G43620 Arabidopsis lyrata HOM05D007852 ORTHO05D009916 4.0e-07 58.5 44 52.3
A08p24840 Brassica napus HOM05D007852 ORTHO05D009916 4.0e-07 58.5 49 49.0
BraA08t34439Z Brassica rapa HOM05D007852 ORTHO05D009916 4.0e-07 58.5 49 49.0
AUR62041804 Chenopodium quinoa HOM05D007852 ORTHO05D009916 4.0e-07 58.5 45 46.7
MELO3C002684.2 Cucumis melo HOM05D007852 ORTHO05D009916 4.0e-07 58.5 57 47.4
Phvul.002G242100 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 4.0e-07 58.5 56 46.4
BcaC06g35465 Brassica carinata HOM05D007852 ORTHO05D009916 5.2e-07 58.2 44 52.3
BraA07t28818Z Brassica rapa HOM05D007852 ORTHO05D009916 5.2e-07 58.2 44 52.3
C03p76190 Brassica napus HOM05D007852 ORTHO05D009916 8.9e-07 57.4 75 37.3
ClCG03G007370 Citrullus lanatus HOM05D007852 ORTHO05D009916 8.9e-07 57.4 73 39.7
BcaC01g00138 Brassica carinata HOM05D007852 ORTHO05D009916 1.2e-06 57.0 49 46.9
AUR62039495 Chenopodium quinoa HOM05D007852 ORTHO05D009916 1.2e-06 57.0 45 46.7
Manes.16G043700 Manihot esculenta HOM05D007852 ORTHO05D009916 1.5e-06 56.6 40 55.0
Pp3c20_15620 Physcomitrium patens HOM05D007852 ORTHO05D009916 1.5e-06 56.6 54 44.4
Glyma.05G162400 Glycine max HOM05D007852 ORTHO05D009916 2.0e-06 56.2 57 43.9
AagrBONN_evm.TU.Sc2ySwM_344.4223 Anthoceros agrestis HOM05D007852 ORTHO05D009916 2.6e-06 55.8 47 48.9
Psat7g067600 Pisum sativum HOM05D007852 ORTHO05D009916 2.6e-06 55.8 45 46.7
Ah.14g086910 Amaranthus hybridus HOM05D000275 ORTHO05D009916 3.4e-06 55.5 41 51.2
BcaC05g26993 Brassica carinata HOM05D007852 ORTHO05D009916 3.4e-06 55.5 44 50.0
C05p28530 Brassica napus HOM05D007852 ORTHO05D009916 3.4e-06 55.5 44 50.0
BolC5t31577H Brassica oleracea HOM05D007852 ORTHO05D009916 3.4e-06 55.5 44 50.0
Mapoly0039s0106 Marchantia polymorpha HOM05D007852 ORTHO05D009916 3.4e-06 55.5 48 43.8
C07p15740 Brassica napus HOM05D007852 ORTHO05D009916 4.4e-06 55.1 42 52.4
BolC3t19875H Brassica oleracea HOM05D007852 ORTHO05D009916 4.4e-06 55.1 47 48.9
BolC7t42066H Brassica oleracea HOM05D007852 ORTHO05D009916 4.4e-06 55.1 42 52.4
Thhalv10009162m.g Eutrema salsugineum HOM05D007852 ORTHO05D009916 5.7e-06 54.7 55 43.6
Sabra04G0041600 Salix brachista HOM05D007852 ORTHO05D009916 5.7e-06 54.7 42 47.6
Mapoly0042s0091 Marchantia polymorpha HOM05D007852 ORTHO05D009916 7.5e-06 54.3 44 40.9


User provided reference genes

Program Settings