Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.4e-90 335.5 168 100.0
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 1.5e-73 279.6 166 82.5
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 4.9e-72 274.6 166 79.5
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 6.5e-72 274.2 167 80.2
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 6.5e-72 274.2 167 80.2
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 8.4e-72 273.9 167 79.6
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 8.4e-72 273.9 166 80.7
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 1.9e-71 272.7 168 80.4
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.5e-71 271.2 166 77.7
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 7.1e-71 270.8 166 77.7
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.2e-70 270.0 167 77.8
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 3.5e-70 268.5 170 76.5
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 7.9e-70 267.3 169 78.1
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 7.9e-70 267.3 166 77.7
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.0e-69 266.9 167 78.4
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.3e-69 266.5 166 77.1
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 1.8e-69 266.2 166 77.1
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.3e-69 265.8 170 76.5
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 3.0e-69 265.4 166 77.7
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.0e-69 265.4 166 76.5
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 5.1e-69 264.6 170 77.1
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 6.7e-69 264.2 165 77.0
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 6.7e-69 264.2 189 72.0
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 6.7e-69 264.2 167 79.6
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 8.7e-69 263.8 167 77.2
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 8.7e-69 263.8 167 77.2
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 8.7e-69 263.8 167 77.2
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 8.7e-69 263.8 167 77.2
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.1e-68 263.5 166 76.5
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 1.5e-68 263.1 167 76.6
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.5e-68 263.1 166 75.9
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.5e-68 263.1 166 75.9
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.9e-68 262.7 167 78.4
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 3.3e-68 261.9 167 76.0
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 4.3e-68 261.5 155 81.3
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 4.3e-68 261.5 170 76.5
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 4.3e-68 261.5 170 76.5
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 9.6e-68 260.4 170 74.7
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 1.3e-67 260.0 167 75.4
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.6e-67 259.6 168 74.4
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 2.8e-67 258.8 170 74.1
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 3.7e-67 258.5 166 75.9
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 6.3e-67 257.7 167 76.6
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 6.3e-67 257.7 170 75.3
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 8.2e-67 257.3 155 80.6
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 1.1e-66 256.9 172 75.6
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.8e-66 256.1 166 73.5
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.8e-66 256.1 170 74.7
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 4.1e-66 255.0 166 74.7
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 4.1e-66 255.0 167 76.0
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 5.3e-66 254.6 161 77.0
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 6.9e-66 254.2 166 72.9
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 6.9e-66 254.2 168 74.4
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 6.9e-66 254.2 168 73.8
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 5.9e-65 251.1 169 74.0
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 7.6e-65 250.8 153 77.8
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 1.0e-64 250.4 171 72.5
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 1.0e-64 250.4 173 71.7
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.3e-64 250.0 165 73.9
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.7e-64 249.6 164 74.4
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 2.2e-64 249.2 169 73.4
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 2.9e-64 248.8 165 73.9
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 3.8e-64 248.4 169 72.8
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 6.5e-64 247.7 167 74.3
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 6.5e-64 247.7 153 75.8
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 6.5e-64 247.7 170 71.8
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 8.4e-64 247.3 168 73.2
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 8.4e-64 247.3 168 73.2
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 8.4e-64 247.3 168 73.2
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 1.4e-63 246.5 174 71.3
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 1.4e-63 246.5 169 71.6
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.5e-63 245.7 170 71.8
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 3.2e-63 245.4 153 74.5
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 3.2e-63 245.4 153 75.2
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 3.2e-63 245.4 166 71.7
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 4.2e-63 245.0 168 72.6
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 4.2e-63 245.0 168 72.6
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 4.2e-63 245.0 167 73.1
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.2e-63 245.0 169 72.2
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 9.3e-63 243.8 168 72.6
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.6e-62 243.0 166 71.7
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 2.7e-62 242.3 175 69.7
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.7e-62 242.3 155 74.8
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 7.9e-62 240.7 152 75.7
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 7.9e-62 240.7 169 71.0
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 1.8e-61 239.6 151 73.5
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.3e-61 239.2 151 74.8
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 3.0e-61 238.8 152 74.3
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.1e-61 238.0 153 73.9
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 5.1e-61 238.0 150 74.7
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 6.7e-61 237.7 179 67.6
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 6.7e-61 237.7 150 73.3
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 8.7e-61 237.3 137 82.5
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 8.7e-61 237.3 171 69.6
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.1e-60 236.9 151 74.8
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.1e-60 236.9 151 74.8
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.1e-60 236.9 152 73.7
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.1e-60 236.9 137 81.8
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.5e-60 236.5 151 74.2
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 2.5e-60 235.7 154 71.4
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 7.4e-60 234.2 164 71.3
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.3e-59 233.4 137 81.8
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 1.6e-59 233.0 137 81.8
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.8e-59 232.3 171 67.8
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.8e-59 232.3 140 81.4
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 3.7e-59 231.9 151 73.5
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.8e-59 231.5 137 81.8
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.8e-58 229.6 150 74.0
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 2.4e-58 229.2 163 69.3
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 4.1e-58 228.4 136 77.9
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 9.0e-58 227.3 161 70.2
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.5e-57 226.5 137 76.6
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 2.9e-56 222.2 136 77.2
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 6.5e-56 221.1 166 66.9
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.5e-55 219.2 167 66.5
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 4.6e-54 214.9 166 66.3
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 5.1e-53 211.5 164 57.9
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.0e-48 197.2 133 71.4
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 2.5e-47 192.6 109 84.4
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 4.2e-47 191.8 152 65.1
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 7.2e-47 191.0 130 73.1
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 2.7e-46 189.1 167 53.9
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 6.7e-45 184.5 109 82.6
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 1.7e-43 179.9 113 73.5
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.0e-41 172.9 126 70.6
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 5.9e-41 171.4 143 60.8
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.0e-40 170.6 109 77.1
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 8.0e-38 161.0 150 51.3
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 1.3e-35 153.7 113 66.4
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 8.5e-32 141.0 103 66.0
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 4.2e-31 138.7 100 65.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 4.2e-31 138.7 124 57.3
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.1e-30 134.8 69 88.4
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 4.0e-29 132.1 184 46.7
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.0e-28 129.8 84 72.6
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.7e-27 126.7 84 71.4
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.7e-27 125.6 69 82.6
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 7.0e-26 121.3 85 68.2
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.1e-26 120.9 63 85.7
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.3e-24 117.1 69 79.7
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 6.5e-24 114.8 156 42.9
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 2.5e-23 112.8 80 71.2
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 1.2e-20 104.0 64 78.1
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 5.9e-17 91.7 112 49.1
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.7e-16 90.1 69 65.2
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 9.5e-15 84.3 66 60.6
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 8.0e-14 81.3 44 84.1
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 1.2e-12 77.4 56 58.9
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 4.4e-12 75.5 58 63.8


User provided reference genes

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