Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 7.3e-72 273.9 145 100.0
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 4.6e-26 121.7 141 59.6
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 5.1e-25 118.2 154 54.5
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 1.5e-24 116.7 102 66.7
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.9e-24 116.3 107 71.0
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 2.8e-23 112.5 89 76.4
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 3.7e-23 112.1 114 63.2
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 1.4e-22 110.2 114 64.0
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 1.4e-22 110.2 84 78.6
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 1.8e-22 109.8 144 51.4
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 4.0e-22 108.6 115 62.6
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 9.0e-22 107.5 142 50.7
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 9.0e-22 107.5 122 55.7
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.2e-21 107.1 81 79.0
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 2.0e-21 106.3 147 49.7
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 2.6e-21 105.9 137 49.6
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 1.0e-20 104.0 83 78.3
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 1.7e-20 103.2 134 51.5
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 2.2e-20 102.8 85 71.8
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 3.8e-20 102.1 75 80.0
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 4.9e-20 101.7 84 71.4
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 8.4e-20 100.9 148 53.4
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 1.9e-19 99.8 120 53.3
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 1.9e-19 99.8 140 50.7
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 1.9e-19 99.8 101 63.4
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 1.9e-19 99.8 68 82.4
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 2.5e-19 99.4 129 51.2
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 2.5e-19 99.4 150 51.3
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 2.5e-19 99.4 114 57.9
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 2.5e-19 99.4 113 58.4
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 2.5e-19 99.4 83 69.9
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 4.2e-19 98.6 92 65.2
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 5.5e-19 98.2 136 51.5
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 1.2e-18 97.1 139 51.1
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 1.6e-18 96.7 153 49.7
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 1.6e-18 96.7 91 64.8
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 2.1e-18 96.3 115 53.0
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 2.7e-18 95.9 79 70.9
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 3.5e-18 95.5 66 78.8
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 4.6e-18 95.1 92 63.0
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 4.6e-18 95.1 136 51.5
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 4.6e-18 95.1 141 51.8
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 4.6e-18 95.1 83 69.9
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 4.6e-18 95.1 83 69.9
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 6.0e-18 94.7 68 77.9
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 1.0e-17 94.0 114 52.6
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 1.0e-17 94.0 83 71.1
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 1.0e-17 94.0 65 84.6
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.3e-17 93.6 154 48.7
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 1.3e-17 93.6 66 75.8
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 1.3e-17 93.6 66 81.8
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 1.3e-17 93.6 66 81.8
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 1.8e-17 93.2 92 67.4
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.8e-17 93.2 74 74.3
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.8e-17 93.2 76 75.0
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 1.8e-17 93.2 152 49.3
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 2.3e-17 92.8 112 58.0
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 3.0e-17 92.4 155 45.2
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 3.0e-17 92.4 83 69.9
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.0e-17 92.4 94 67.0
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.0e-17 92.4 94 67.0
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 5.1e-17 91.7 143 49.7
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 5.1e-17 91.7 148 43.9
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 5.1e-17 91.7 65 83.1
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 8.7e-17 90.9 87 65.5
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 1.1e-16 90.5 86 67.4
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 1.1e-16 90.5 68 76.5
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 1.5e-16 90.1 147 44.9
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 2.5e-16 89.4 138 47.1
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 7.4e-16 87.8 136 47.8
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 9.7e-16 87.4 71 71.8
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 1.3e-15 87.0 81 66.7
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 3.7e-15 85.5 112 57.1
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 1.1e-14 84.0 60 76.7
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 4.1e-14 82.0 156 43.6
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 4.1e-14 82.0 151 44.4
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 1.2e-13 80.5 66 74.2
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 1.5e-13 80.1 74 63.5
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 5.9e-13 78.2 118 47.5
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 3.8e-12 75.5 104 47.1
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 5.0e-12 75.1 59 69.5
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 6.5e-12 74.7 141 44.7
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 2.5e-11 72.8 59 67.8
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 2.5e-11 72.8 87 49.4
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 1.0e-09 67.4 88 50.0
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 1.0e-09 67.4 65 61.5
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 1.1e-08 63.9 123 40.7
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 2.0e-08 63.2 124 42.7
SGA_v2.0_scaffold10G05320 Striga asiatica HOM05D007680 ORTHO05D009702 9.7e-08 60.8 46 69.6
DCAR_006372 Daucus carota HOM05D007680 ORTHO05D009702 6.3e-07 58.2 106 39.6
MBI17_g15050_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 1.4e-06 57.0 60 48.3
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 6.9e-06 54.7 133 39.1
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 9.1e-06 54.3 54 57.4


User provided reference genes

Program Settings