Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 1.0e-257 892.9 450 100.0
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 7.8e-157 557.8 439 63.8
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 5.3e-153 545.0 439 62.9
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 2.1e-146 523.1 439 60.6
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 2.6e-144 516.2 434 58.5
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.7e-143 513.5 450 58.9
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 1.7e-143 513.5 439 59.0
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.9e-143 511.9 450 58.7
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 6.4e-143 511.5 438 58.7
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 1.4e-142 510.4 441 58.5
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 2.4e-142 509.6 443 58.9
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 3.2e-142 509.2 439 58.5
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 5.4e-142 508.4 441 58.3
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 9.3e-142 507.7 441 58.3
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.6e-141 505.4 465 57.4
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 1.3e-140 503.8 432 58.8
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 3.0e-140 502.7 439 59.5
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 3.0e-140 502.7 441 57.4
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 3.9e-140 502.3 439 58.3
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 8.7e-140 501.1 470 55.5
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 1.1e-139 500.7 441 56.5
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 1.1e-139 500.7 471 54.6
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 1.1e-139 500.7 441 56.7
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 5.6e-139 498.4 437 59.3
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 1.6e-138 496.9 442 58.4
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 2.8e-138 496.1 442 57.0
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 2.8e-138 496.1 436 58.0
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 2.8e-138 496.1 434 58.5
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 4.8e-138 495.4 436 58.0
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 2.4e-137 493.0 441 57.8
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 2.4e-137 493.0 443 55.8
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 2.4e-137 493.0 433 57.5
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 5.3e-137 491.9 435 56.8
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 6.9e-137 491.5 443 56.4
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 1.5e-136 490.3 436 55.0
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 5.8e-136 488.4 435 57.2
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 7.6e-136 488.0 436 56.0
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 1.3e-135 487.3 438 56.6
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.2e-135 486.5 475 54.7
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 2.9e-135 486.1 436 57.3
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 4.9e-135 485.3 435 56.1
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 6.4e-135 485.0 444 55.6
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.4e-135 484.6 439 57.4
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 8.4e-135 484.6 438 55.9
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 1.1e-134 484.2 436 56.0
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 1.1e-134 484.2 436 56.0
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 1.1e-134 484.2 435 57.0
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 2.5e-134 483.0 457 54.7
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 9.3e-134 481.1 436 56.4
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 9.3e-134 481.1 410 59.3
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 1.6e-133 480.3 488 51.6
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 3.5e-133 479.2 437 55.6
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 3.5e-133 479.2 437 55.6
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 4.6e-133 478.8 439 55.1
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 6.0e-133 478.4 430 57.2
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 1.0e-132 477.6 433 55.4
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 1.0e-132 477.6 436 55.5
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 1.3e-132 477.2 434 54.6
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 1.8e-132 476.9 436 56.2
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 3.9e-132 475.7 436 54.6
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 3.9e-132 475.7 432 55.6
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 2.5e-131 473.0 437 54.5
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 4.3e-131 472.2 431 58.5
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.3e-130 470.7 388 58.8
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 6.2e-130 468.4 441 54.0
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 3.1e-129 466.1 388 58.8
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 5.3e-129 465.3 510 49.8
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 1.4e-126 457.2 467 51.4
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 2.5e-126 456.4 382 59.9
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 5.5e-126 455.3 363 62.5
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 9.3e-126 454.5 552 46.6
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 1.6e-125 453.8 386 57.8
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 2.1e-125 453.4 448 52.9
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 2.7e-125 453.0 429 54.3
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 7.4e-123 444.9 470 51.9
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 6.3e-122 441.8 382 58.6
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 3.8e-119 432.6 414 53.4
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 4.6e-117 425.6 437 51.7
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 3.7e-114 416.0 573 42.8
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 3.4e-112 409.5 372 57.3
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 5.0e-111 405.6 435 51.0
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 1.9e-110 403.7 430 47.7
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 1.4e-108 397.5 457 48.8
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 6.3e-106 388.7 383 53.3
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 1.8e-105 387.1 318 61.9
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 1.8e-105 387.1 428 47.0
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 4.1e-105 386.0 405 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 2.9e-103 379.8 428 46.7
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 4.7e-101 372.5 319 59.2
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 1.8e-100 370.5 324 59.9
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.8e-100 370.5 286 64.3
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 9.7e-99 364.8 435 45.7
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 9.7e-91 338.2 290 58.6
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 5.5e-86 322.4 288 58.7
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 1.0e-84 318.2 360 47.5
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 3.7e-82 309.7 262 60.7
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 1.8e-81 307.4 315 51.4
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 3.9e-71 273.1 287 52.3
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 2.3e-55 220.7 189 57.1
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 3.1e-52 210.3 283 45.2
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 2.3e-47 194.1 331 37.5
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 8.6e-47 192.2 157 62.4
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 8.6e-47 192.2 181 55.2
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 2.0e-43 181.0 303 39.3
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 4.2e-41 173.3 177 52.5
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.5e-38 164.9 201 45.3
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 2.5e-38 164.1 128 62.5
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 5.6e-38 162.9 155 53.5
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 5.8e-35 152.9 109 70.6
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 4.3e-30 136.7 156 48.7
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 5.6e-30 136.3 123 56.9
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 5.8e-27 126.3 406 27.6
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 1.3e-26 125.2 93 58.1
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 3.2e-25 120.6 96 55.2
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 4.6e-24 116.7 97 60.8
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 1.3e-23 115.2 94 56.4
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 1.1e-09 68.9 78 47.4
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 7.1e-09 66.2 69 47.8
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 3.5e-08 63.9 62 48.4
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 3.9e-07 60.5 45 53.3
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 1.1e-06 58.9 41 56.1
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 5.7e-06 56.6 68 36.8


User provided reference genes

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