Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 0.0e+00 1132.5 847 100.0
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 1.6e-30 139.0 143 50.3
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 8.1e-30 136.7 142 48.6
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 3.1e-29 134.8 142 49.3
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 9.9e-28 129.8 145 47.6
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 1.3e-27 129.4 144 49.3
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 2.2e-27 128.6 212 37.7
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 3.8e-27 127.9 145 46.9
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 3.8e-27 127.9 145 47.6
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 6.4e-27 127.1 141 44.0
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 1.9e-26 125.6 145 46.9
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 3.2e-26 124.8 151 47.0
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 5.4e-26 124.0 141 46.1
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 5.4e-26 124.0 144 46.5
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 5.4e-26 124.0 144 46.5
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 7.1e-26 123.6 145 46.2
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 7.1e-26 123.6 141 48.2
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 7.1e-26 123.6 144 44.4
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 7.1e-26 123.6 144 43.8
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 9.3e-26 123.2 140 47.9
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 9.3e-26 123.2 145 46.2
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 9.3e-26 123.2 144 43.8
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 1.2e-25 122.9 144 45.8
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.2e-25 122.9 144 46.5
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 2.7e-25 121.7 143 44.1
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 3.5e-25 121.3 144 45.1
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 4.6e-25 120.9 140 47.9
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 6.0e-25 120.6 145 44.1
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 6.0e-25 120.6 144 43.1
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 7.9e-25 120.2 145 45.5
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 7.9e-25 120.2 203 36.5
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 7.9e-25 120.2 145 44.8
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 7.9e-25 120.2 268 35.4
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 1.0e-24 119.8 260 35.0
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.0e-24 119.8 140 45.7
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 1.0e-24 119.8 233 33.5
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 1.3e-24 119.4 142 45.8
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.3e-24 119.4 144 43.8
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 1.7e-24 119.0 145 44.1
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 5.1e-24 117.5 145 44.8
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 5.1e-24 117.5 141 46.1
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 6.6e-24 117.1 142 45.8
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 1.1e-23 116.3 145 44.1
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 1.5e-23 115.9 145 44.1
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 1.9e-23 115.5 234 32.9
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 1.9e-23 115.5 145 42.1
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.9e-23 115.5 137 44.5
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 1.9e-23 115.5 272 33.5
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 1.9e-23 115.5 261 34.9
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 2.5e-23 115.2 140 45.7
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 3.3e-23 114.8 145 43.4
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 4.3e-23 114.4 144 41.7
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 4.3e-23 114.4 136 44.1
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 4.3e-23 114.4 137 44.5
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 4.3e-23 114.4 146 41.8
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 4.3e-23 114.4 145 44.1
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 7.3e-23 113.6 140 42.9
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 7.3e-23 113.6 147 43.5
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 9.6e-23 113.2 124 43.5
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 9.6e-23 113.2 145 45.5
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 1.3e-22 112.8 132 43.2
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 1.3e-22 112.8 144 43.8
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 1.3e-22 112.8 248 35.5
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 1.3e-22 112.8 140 42.1
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 1.6e-22 112.5 145 43.4
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 2.1e-22 112.1 144 41.7
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 3.6e-22 111.3 144 46.5
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 3.6e-22 111.3 144 40.3
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 3.6e-22 111.3 144 40.3
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 4.8e-22 110.9 306 29.7
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 4.8e-22 110.9 144 42.4
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 6.2e-22 110.5 147 44.2
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 8.1e-22 110.2 144 43.1
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 1.4e-21 109.4 227 35.2
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 1.8e-21 109.0 143 42.0
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 2.4e-21 108.6 153 41.8
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.4e-21 108.6 144 40.3
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 4.0e-21 107.8 225 34.2
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 9.0e-21 106.7 246 31.7
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 9.0e-21 106.7 144 38.9
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 1.2e-20 106.3 145 41.4
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 1.2e-20 106.3 145 41.4
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.2e-20 106.3 144 38.9
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.5e-20 105.9 144 40.3
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 1.5e-20 105.9 146 42.5
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.6e-20 105.1 142 40.8
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 2.6e-20 105.1 221 34.4
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 5.8e-20 104.0 144 41.0
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 7.6e-20 103.6 151 40.4
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 7.6e-20 103.6 220 30.0
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 9.9e-20 103.2 146 42.5
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 9.9e-20 103.2 146 39.0
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 2.2e-19 102.1 131 40.5
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.9e-19 101.7 144 41.0
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 2.9e-19 101.7 142 41.5
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 3.8e-19 101.3 264 31.8
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 4.9e-19 100.9 144 43.1
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.1e-18 99.8 275 29.8
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.9e-18 99.0 144 41.0
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.4e-18 98.6 326 29.8
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 7.1e-18 97.1 144 41.0
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 1.8e-16 92.4 269 29.7
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.8e-16 92.4 260 29.6
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 2.3e-16 92.0 103 43.7
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 3.9e-16 91.3 103 45.6
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.9e-15 89.0 125 40.8
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 3.3e-15 88.2 210 30.5
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 5.6e-15 87.4 116 37.1
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 4.8e-14 84.3 151 33.1
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.1e-13 83.2 142 34.5
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 1.1e-13 83.2 179 29.6
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 1.8e-13 82.4 105 40.0
SEGI_34809 Sequoiadendron giganteum HOM05D015959 ORTHO05D018119 3.1e-13 81.6 127 36.2
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 6.9e-13 80.5 282 27.3
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 6.9e-13 80.5 140 34.3
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 1.7e-11 75.9 98 40.8
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 2.2e-11 75.5 95 36.8
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 2.9e-11 75.1 107 40.2
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 2.5e-10 72.0 105 38.1
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 2.5e-10 72.0 112 37.5
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 5.5e-10 70.9 144 31.9
SEGI_09920 Sequoiadendron giganteum HOM05D015959 ORTHO05D018119 9.3e-10 70.1 98 39.8
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 3.5e-09 68.2 143 34.3
SEGI_19873 Sequoiadendron giganteum HOM05D015959 ORTHO05D018119 3.5e-09 68.2 119 37.0
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 1.0e-08 66.6 66 48.5
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.0e-08 66.6 201 30.3
SEGI_01966 Sequoiadendron giganteum HOM05D005242 ORTHO05D006778 1.3e-08 66.2 121 33.9
SEGI_03492 Sequoiadendron giganteum HOM05D015959 ORTHO05D018119 2.3e-08 65.5 118 36.4
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 3.0e-08 65.1 173 31.2
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 3.0e-08 65.1 68 48.5
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 1.5e-07 62.8 68 44.1
SEGI_08093 Sequoiadendron giganteum HOM05D015959 ORTHO05D018119 4.3e-07 61.2 91 39.6
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 9.6e-07 60.1 68 42.6
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 9.6e-07 60.1 140 29.3
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 3.7e-06 58.2 60 50.0
SEGI_28824 Sequoiadendron giganteum HOM05D015959 ORTHO05D018119 6.3e-06 57.4 126 31.0


User provided reference genes

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