Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.6e-91 339.3 168 100.0
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 7.6e-89 330.5 168 96.4
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 1.9e-79 299.3 168 86.3
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.9e-79 299.3 168 86.3
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 7.9e-78 293.9 168 85.1
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.3e-77 293.1 168 83.3
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 1.3e-77 293.1 168 83.9
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 2.3e-77 292.4 168 84.5
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 2.3e-77 292.4 168 82.1
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 3.0e-77 292.0 168 83.3
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 3.0e-77 292.0 168 85.1
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 3.0e-77 292.0 168 82.7
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 3.9e-77 291.6 168 83.3
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 5.1e-77 291.2 168 84.5
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 6.7e-77 290.8 168 82.7
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.1e-76 290.0 168 83.9
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 1.5e-76 289.7 168 83.9
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.5e-76 289.7 168 83.3
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 2.5e-76 288.9 168 83.3
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 4.3e-76 288.1 168 83.3
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 5.6e-76 287.7 168 82.1
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 5.6e-76 287.7 168 82.7
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 5.6e-76 287.7 168 82.7
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 5.6e-76 287.7 168 82.1
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 5.6e-76 287.7 168 82.1
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 7.4e-76 287.3 168 83.9
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 7.4e-76 287.3 168 82.1
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 9.6e-76 287.0 168 81.5
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 9.6e-76 287.0 168 81.5
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.3e-75 286.6 168 82.7
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.3e-75 286.6 168 79.8
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.6e-75 286.2 168 82.1
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 1.6e-75 286.2 168 81.5
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 2.1e-75 285.8 168 81.0
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 3.7e-75 285.0 168 81.0
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 3.7e-75 285.0 168 80.4
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 6.2e-75 284.3 168 82.1
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 6.2e-75 284.3 168 82.7
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 6.2e-75 284.3 168 81.5
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 6.2e-75 284.3 168 80.4
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 6.2e-75 284.3 168 79.8
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 6.2e-75 284.3 168 79.8
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 8.1e-75 283.9 168 81.5
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 8.1e-75 283.9 168 81.5
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 8.1e-75 283.9 168 81.5
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 1.1e-74 283.5 168 81.5
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 1.4e-74 283.1 168 80.4
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 1.4e-74 283.1 168 79.8
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 1.4e-74 283.1 168 80.4
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.4e-74 283.1 168 80.4
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.4e-74 283.1 168 80.4
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 1.8e-74 282.7 168 79.8
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.8e-74 282.7 168 81.5
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 2.4e-74 282.3 168 79.8
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.4e-74 282.3 168 81.0
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 3.1e-74 282.0 168 79.8
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 5.3e-74 281.2 168 81.0
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 5.3e-74 281.2 168 79.8
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 9.0e-74 280.4 158 85.4
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 1.5e-73 279.6 168 80.4
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.0e-73 279.3 168 81.0
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.0e-73 279.3 168 81.0
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 5.8e-73 277.7 168 78.6
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 5.8e-73 277.7 168 78.6
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 5.8e-73 277.7 168 78.6
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 5.8e-73 277.7 168 80.4
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 1.0e-72 276.9 168 79.2
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.0e-72 276.9 168 78.6
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 1.7e-72 276.2 168 78.0
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 2.2e-72 275.8 168 79.2
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 2.2e-72 275.8 168 77.4
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 2.2e-72 275.8 168 77.4
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.2e-72 275.8 168 79.2
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 2.9e-72 275.4 168 77.4
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.9e-72 275.4 168 77.4
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 3.8e-72 275.0 168 77.4
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 3.8e-72 275.0 168 78.0
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 3.8e-72 275.0 168 76.8
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 4.9e-72 274.6 168 76.8
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 6.5e-72 274.2 168 77.4
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 8.4e-72 273.9 168 76.8
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 8.4e-72 273.9 168 76.8
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 8.4e-72 273.9 168 76.8
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 8.4e-72 273.9 168 78.0
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 1.1e-71 273.5 168 78.6
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.4e-71 273.1 168 77.4
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.9e-71 272.7 168 78.0
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 3.2e-71 271.9 167 77.8
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 5.5e-71 271.2 168 76.8
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 7.1e-71 270.8 168 76.8
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 7.1e-71 270.8 168 76.8
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.6e-70 269.6 159 79.9
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 1.6e-70 269.6 168 76.8
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 1.6e-70 269.6 202 67.8
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 3.9e-69 265.0 168 72.6
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 5.1e-69 264.6 168 73.2
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.5e-68 262.3 168 77.4
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 9.6e-68 260.4 168 69.0
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.1e-67 259.2 168 71.4
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 2.1e-67 259.2 168 75.6
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 5.0e-64 248.1 165 73.3
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.3e-61 240.0 168 72.0
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 1.3e-61 240.0 168 66.1
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 1.8e-61 239.6 168 71.4
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 3.0e-61 238.8 168 70.2
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 3.9e-61 238.4 168 69.0
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.3e-60 235.3 142 81.0
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 7.4e-60 234.2 138 83.3
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.6e-59 233.0 165 69.1
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 1.4e-58 229.9 138 78.3
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 1.7e-56 223.0 138 76.8
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 5.0e-56 221.5 168 63.1
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 6.5e-56 221.1 138 79.7
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 2.1e-54 216.1 168 64.3
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 2.5e-52 209.1 170 61.2
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 4.1e-50 201.8 118 80.5
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 1.7e-48 196.4 168 54.2
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 1.1e-47 193.7 118 78.8
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.0e-44 183.0 118 79.7
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 4.4e-44 181.8 104 84.6
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.4e-42 176.0 135 65.9
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 1.1e-36 157.1 168 52.4
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 4.4e-36 155.2 168 51.8
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.7e-35 153.3 168 49.4
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 1.8e-34 149.8 158 54.4
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 2.5e-31 139.4 76 84.2
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 1.4e-29 133.7 92 71.7
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 1.5e-28 130.2 168 44.6
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 2.4e-26 122.9 169 43.2
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 8.0e-22 107.8 168 38.7
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 2.0e-20 103.2 92 58.7
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 3.4e-20 102.4 168 41.1
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 9.8e-20 100.9 60 81.7
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.7e-19 99.0 139 46.8
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.4e-18 96.3 73 63.0
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.0e-16 90.9 50 80.0
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 6.6e-16 88.2 50 80.0
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 3.0e-13 79.3 47 74.5
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 3.0e-13 79.3 47 74.5
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 2.2e-11 73.2 45 73.3
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 1.6e-09 67.0 49 63.3
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 4.3e-07 58.9 45 62.2


User provided reference genes

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