Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 4061.1 2129 100.0
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2079.7 2162 54.3
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2078.9 2150 54.3
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2062.3 2155 53.5
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 1934.5 2140 51.5
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 1934.1 2066 52.4
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1925.6 2103 51.8
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 1911.3 2074 51.2
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1908.3 2156 49.9
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1907.5 2075 51.4
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1906.3 2152 50.7
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 1904.8 2072 51.9
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 1893.2 2076 51.4
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 1885.9 2134 50.1
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 1875.1 2128 50.0
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 1869.4 2124 50.0
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 1865.9 2145 50.1
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 1860.5 2130 50.1
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 1852.8 2073 51.0
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1851.3 2079 50.2
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 1841.2 2083 49.9
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 1836.2 2079 50.1
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 1833.9 2138 49.4
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 1819.7 2061 49.9
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1819.3 2032 51.1
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 1806.6 2102 49.8
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 1804.3 2115 48.9
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1803.1 2140 48.6
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1793.9 2148 48.6
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1792.7 2134 48.0
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1791.5 2146 49.0
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1790.4 2161 47.8
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1775.8 2133 48.2
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1773.4 2125 48.4
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1773.1 2120 47.8
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1770.7 2133 48.8
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1762.7 2134 47.9
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1762.3 2135 47.9
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1760.7 2183 47.3
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1758.0 2100 47.4
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1753.4 2068 49.3
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1752.6 2141 48.8
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1747.6 2097 48.5
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1744.2 2129 47.3
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1739.9 2134 47.2
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1738.4 2131 47.3
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1729.1 2152 47.7
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1718.4 2113 46.6
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1715.7 2141 46.5
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1713.0 2138 45.8
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1704.9 2253 45.2
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1692.6 2110 47.1
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1689.1 2154 45.8
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1687.2 2112 47.3
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1686.8 2111 47.4
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1678.3 2128 45.5
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1669.8 2137 47.0
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1669.4 2116 47.0
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1662.9 2115 46.8
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1658.7 2092 46.4
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1654.0 2066 47.1
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1653.3 2138 45.3
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1649.4 2110 47.0
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1649.0 2109 46.2
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1644.0 2116 46.6
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1639.8 2146 46.1
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1628.2 2147 46.0
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1626.3 1942 48.1
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1622.1 2125 45.0
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1620.1 2100 45.5
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1609.3 2058 45.9
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1605.9 2133 43.8
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1605.1 2214 43.1
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1603.6 2076 45.3
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1600.9 2144 44.7
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1596.6 2132 44.3
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1593.9 2132 45.2
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1572.0 2104 44.2
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1563.1 2014 45.6
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1562.0 2117 44.6
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1547.7 2179 43.6
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1483.4 2087 43.7
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1455.7 1910 44.9
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1373.6 1695 46.5
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1293.5 2293 37.4
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1256.9 1738 44.0
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1206.0 2274 36.1
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1205.3 1492 47.7
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1194.5 2076 38.1
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1150.6 2093 36.3
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1139.8 1140 54.0
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1090.1 2190 34.1
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 4.4e-242 843.2 834 54.6
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 5.2e-235 819.7 2160 30.9
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 5.3e-211 740.0 738 54.7
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 2.4e-203 714.5 814 49.1
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.4e-195 688.7 1178 37.9
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.3e-190 672.2 831 46.2
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 5.7e-181 640.2 1542 32.0
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 2.6e-157 561.6 784 43.2
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 1.7e-148 532.3 769 42.1
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 5.8e-133 480.7 935 36.7
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 9.6e-96 357.1 408 48.5
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 5.4e-91 341.3 404 47.0
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 3.8e-76 292.0 264 59.8
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.9e-67 263.1 305 48.5
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 4.6e-66 258.5 230 58.3
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.1e-56 227.3 435 35.4
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 9.1e-54 217.6 274 44.2
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 4.7e-50 205.3 124 78.2
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 6.1e-50 204.9 225 50.7
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 2.1e-42 179.9 341 34.9
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 3.6e-34 152.5 202 42.1
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 5.2e-33 148.7 261 42.5
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.6e-29 137.1 121 55.4
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 5.9e-29 135.2 134 55.2
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 4.4e-24 119.0 80 72.5
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 2.2e-23 116.7 189 41.8
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 4.6e-21 109.0 506 24.7
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 1.0e-17 97.8 69 65.2
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 6.4e-15 88.6 61 65.6
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.4e-14 87.4 69 58.0
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 1.3e-12 80.9 58 65.5
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 6.2e-10 72.0 61 59.0
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 2.9e-07 63.2 91 49.5
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 1.1e-06 61.2 69 40.6
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 5.4e-06 58.9 70 41.4


User provided reference genes

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