Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 0.0e+00 1231.9 604 100.0
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 4.5e-240 834.7 572 71.0
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.9e-239 832.0 613 69.0
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 4.0e-233 811.6 612 66.2
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 3.8e-231 805.1 616 66.2
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 4.9e-231 804.7 558 68.1
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 2.5e-227 792.3 614 64.8
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 4.8e-226 788.1 598 65.7
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 1.8e-225 786.2 602 64.3
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.5e-224 783.1 604 63.9
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.5e-224 781.6 624 63.9
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.9e-223 778.1 565 67.8
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 6.5e-223 777.7 554 68.2
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.9e-222 776.2 624 63.8
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.2e-222 775.4 624 63.6
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 4.2e-222 775.0 615 63.4
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 1.2e-221 773.5 607 64.7
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.0e-220 770.4 608 64.1
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.0e-220 770.4 555 68.5
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 1.3e-220 770.0 613 62.2
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.3e-220 769.2 608 64.1
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 2.3e-220 769.2 644 62.9
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 1.1e-219 766.9 604 63.7
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 2.5e-219 765.8 551 67.3
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 4.3e-219 765.0 616 61.4
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.3e-219 765.0 616 61.4
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.3e-219 765.0 616 61.4
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.3e-218 763.5 569 66.4
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.7e-218 761.9 616 61.2
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 6.3e-218 761.1 604 64.2
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 6.3e-218 761.1 614 62.7
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-217 760.4 616 61.2
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.8e-217 759.6 615 60.8
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 2.4e-217 759.2 622 61.4
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.2e-216 756.9 616 62.5
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 1.0e-215 753.8 556 65.1
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.7e-215 753.1 610 62.0
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.0e-215 751.5 613 60.7
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 6.5e-215 751.1 604 61.9
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 6.5e-215 751.1 556 64.6
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 7.2e-214 747.7 601 61.4
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 9.3e-214 747.3 533 68.1
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 3.6e-213 745.3 626 60.9
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 4.6e-213 745.0 612 61.3
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 6.1e-213 744.6 612 61.3
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 6.1e-213 744.6 626 60.9
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.0e-212 743.8 613 61.0
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.8e-212 743.0 602 61.6
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 3.0e-212 742.3 567 63.8
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 5.1e-212 741.5 565 63.4
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 8.8e-212 740.7 618 60.7
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 8.8e-212 740.7 618 60.7
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 2.5e-211 739.2 623 58.9
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 2.5e-211 739.2 598 61.2
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.5e-211 739.2 501 72.3
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 3.3e-211 738.8 616 60.2
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 2.2e-210 736.1 556 63.8
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 1.1e-209 733.8 612 60.6
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.1e-209 733.8 557 63.6
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.4e-209 733.4 564 64.5
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 1.8e-209 733.0 610 62.3
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 1.8e-209 733.0 613 59.7
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 5.3e-209 731.5 564 64.0
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 5.3e-209 731.5 608 61.8
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 2.2e-207 726.1 611 60.6
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 3.8e-207 725.3 612 60.6
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 3.8e-207 725.3 556 66.4
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 6.5e-207 724.5 605 61.7
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 5.5e-206 721.5 607 60.1
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.2e-205 720.3 556 66.2
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 1.1e-203 713.8 618 59.9
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.5e-203 713.4 562 62.6
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.5e-203 713.4 562 62.6
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.2e-202 709.5 647 57.8
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 6.3e-202 708.0 605 60.3
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.8e-201 706.4 622 59.2
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.4e-201 706.1 627 59.8
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 2.4e-201 706.1 553 64.6
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 3.1e-201 705.7 542 64.4
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 4.1e-201 705.3 553 64.6
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 6.9e-201 704.5 553 64.6
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 3.4e-200 702.2 620 59.4
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 3.8e-199 698.7 595 61.2
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 5.0e-199 698.4 581 62.0
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 6.5e-199 698.0 561 63.1
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 1.1e-198 697.2 567 62.6
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 5.5e-198 694.9 612 59.5
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 5.5e-198 694.9 644 57.0
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.2e-197 693.7 567 62.6
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.6e-197 693.3 551 62.3
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.4e-196 690.3 605 58.7
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 4.4e-195 685.3 623 57.9
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 4.4e-195 685.3 623 57.9
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 4.4e-195 685.3 620 58.5
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 7.4e-195 684.5 622 58.0
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 9.7e-195 684.1 620 58.4
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.3e-194 683.7 620 58.2
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 2.2e-194 682.9 568 60.4
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 4.8e-194 681.8 563 60.9
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.1e-193 679.1 624 56.1
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 3.1e-193 679.1 597 58.3
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 5.3e-193 678.3 552 61.2
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 2.0e-192 676.4 628 57.6
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.2e-189 667.2 611 56.5
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 4.4e-187 658.7 562 59.8
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 9.7e-187 657.5 502 66.9
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.8e-186 656.0 531 62.0
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 3.5e-184 649.0 588 60.4
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 5.9e-184 648.3 634 54.1
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 2.9e-183 646.0 600 56.5
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 8.5e-183 644.4 552 60.0
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 5.5e-182 641.7 603 57.5
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 2.1e-181 639.8 603 57.4
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 2.1e-181 639.8 603 57.4
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 6.3e-178 628.2 533 61.5
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 5.9e-176 621.7 614 56.4
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 3.0e-172 609.4 605 56.2
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 1.2e-171 607.4 599 54.1
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 3.4e-171 605.9 630 52.9
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 5.7e-171 605.1 521 61.6
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 3.5e-168 595.9 640 52.2
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 6.6e-167 591.7 603 51.7
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.5e-158 563.9 551 54.8
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 7.0e-153 545.0 625 48.6
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 1.6e-152 543.9 543 54.7
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 9.2e-145 518.1 457 59.7
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 5.6e-142 508.8 393 65.6
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.7e-138 497.3 438 59.1
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.5e-131 474.2 380 59.7
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.9e-126 457.2 399 55.4
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 6.9e-108 395.6 343 56.0
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.6e-101 374.4 291 64.3
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 2.3e-71 274.2 350 46.9
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.3e-61 241.9 623 29.9
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 7.0e-60 236.1 397 38.0
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 2.2e-45 188.0 181 48.6
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 3.4e-38 164.1 144 55.6
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 2.7e-35 154.5 218 39.9
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 6.6e-34 149.8 341 31.4
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 1.7e-26 125.2 76 75.0
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 3.0e-26 124.4 169 40.8
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 9.6e-25 119.4 101 60.4
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 4.9e-21 107.1 159 37.1
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 5.1e-18 97.1 98 52.0
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 2.0e-14 85.1 92 50.0
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 3.8e-13 80.9 58 63.8
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 6.2e-08 63.5 113 38.1
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 1.1e-07 62.8 58 56.9
Actinidia31413 Actinidia chinensis HOM05D004961 ORTHO05D006258 9.9e-06 56.2 36 69.4


User provided reference genes

Program Settings