Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0810G198 Amborella trichopoda HOM05D007455 ORTHO05D006600 0.0e+00 1095.1 707 100.0
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 1.0e-14 86.3 197 31.0
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 5.8e-13 80.5 230 30.0
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 7.5e-13 80.1 228 29.4
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 7.5e-13 80.1 178 33.1
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 9.8e-13 79.7 228 28.9
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 9.8e-13 79.7 230 30.0
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 1.3e-12 79.3 186 31.2
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 1.3e-12 79.3 228 28.5
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 1.3e-12 79.3 228 28.5
MD07G1079700 Malus domestica HOM05D007455 ORTHO05D009431 1.7e-12 79.0 186 32.3
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 3.7e-12 77.8 197 29.9
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 6.4e-12 77.0 171 27.5
CAN.G113.7 Capsicum annuum HOM05D007455 ORTHO05D009431 8.3e-12 76.6 179 33.0
ClCG03G012670 Citrullus lanatus HOM05D007455 ORTHO05D009431 8.3e-12 76.6 184 31.0
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 1.1e-11 76.3 198 24.2
Cpa.g.sc84.2 Carica papaya HOM05D007455 ORTHO05D009431 1.4e-11 75.9 160 34.4
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 1.9e-11 75.5 244 27.5
SEGI_00853 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.9e-11 75.5 197 28.9
Manes.01G179100 Manihot esculenta HOM05D007455 ORTHO05D009431 2.4e-11 75.1 176 32.4
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 3.2e-11 74.7 244 23.0
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 3.2e-11 74.7 182 30.2
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 4.1e-11 74.3 184 29.9
Ciclev10014539m.g Citrus clementina HOM05D002890 ORTHO05D009847 5.4e-11 73.9 173 31.2
Potri.001G276500 Populus trichocarpa HOM05D007455 ORTHO05D009431 5.4e-11 73.9 177 31.1
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 7.0e-11 73.6 308 22.7
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 1.6e-10 72.4 261 28.0
CsaV3_1G043280 Cucumis sativus L. HOM05D007455 ORTHO05D009431 1.6e-10 72.4 190 30.0
PSO384G2302 Papaver somniferum HOM05D007455 ORTHO05D009431 1.6e-10 72.4 161 29.2
TWI79G0736 Tripterygium wilfordii HOM05D007455 ORTHO05D009431 1.6e-10 72.4 176 30.7
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 2.7e-10 71.6 182 26.9
PGSC0003DMG400001336 Solanum tuberosum HOM05D007455 ORTHO05D009431 3.5e-10 71.2 171 32.7
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 4.6e-10 70.9 178 25.8
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 4.6e-10 70.9 185 25.4
Manes.01G179300 Manihot esculenta HOM05D007455 ORTHO05D009431 6.0e-10 70.5 174 31.6
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 6.0e-10 70.5 246 25.6
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 6.0e-10 70.5 288 24.0
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 1.0e-09 69.7 157 28.7
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.0e-09 69.7 219 27.4
Thecc.07G080600 Theobroma cacao HOM05D008483 ORTHO05D010726 1.0e-09 69.7 231 25.5
Prupe.2G102900 Prunus persica HOM05D007455 ORTHO05D009431 1.3e-09 69.3 157 33.8
CANSAT56G3818 Cannabis sativa HOM05D000001 ORTHO05D000003 1.7e-09 68.9 138 27.5
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.7e-09 68.9 194 27.8
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 2.3e-09 68.6 284 22.5
COL.COLO4_05199 Corchorus olitorius HOM05D007455 ORTHO05D009431 2.3e-09 68.6 179 31.3
Nitab4.5_0000276g0130 Nicotiana tabacum HOM05D007455 ORTHO05D009431 2.3e-09 68.6 175 30.9
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 3.0e-09 68.2 238 27.7
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 3.9e-09 67.8 202 24.3
MELO3C015131.2 Cucumis melo HOM05D007455 ORTHO05D009431 5.0e-09 67.4 175 30.3
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 5.0e-09 67.4 187 27.8
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 5.0e-09 67.4 238 27.3
A02p13610 Brassica napus HOM05D007291 ORTHO05D009038 6.6e-09 67.0 158 29.1
BraA02t06420Z Brassica rapa HOM05D007291 ORTHO05D009038 6.6e-09 67.0 158 29.1
Sopen04g025650 Solanum pennellii HOM05D007455 ORTHO05D009431 6.6e-09 67.0 172 32.0
Dinv36177 Davidia involucrata HOM05D007455 ORTHO05D009431 8.6e-09 66.6 161 29.8
Rhsim08G0018600 Rhododendron simsii HOM05D001542 ORTHO05D001416 8.6e-09 66.6 163 29.4
TPR.G8243 Trifolium pratense HOM05D007291 ORTHO05D009038 8.6e-09 66.6 259 24.7
TWI74G1032 Tripterygium wilfordii HOM05D007291 ORTHO05D009038 8.6e-09 66.6 224 25.4
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 1.1e-08 66.2 187 26.2
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 1.1e-08 66.2 219 25.6
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 1.1e-08 66.2 165 29.7
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.5e-08 65.9 205 23.9
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 1.5e-08 65.9 168 27.4
Sc16g0011110 Simmondsia chinensis HOM05D007455 ORTHO05D009431 1.5e-08 65.9 196 26.0
Atru.chr1.887 Acer truncatum HOM05D000001 ORTHO05D000003 1.9e-08 65.5 143 28.7
BcaC03g14744 Brassica carinata HOM05D007291 ORTHO05D009038 1.9e-08 65.5 222 24.8
CiPaw.01G197600 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.9e-08 65.5 158 26.6
Lj3g0007423 Lotus japonicus HOM05D007347 ORTHO05D009296 2.5e-08 65.1 182 28.6
QL06p001562 Quercus lobata HOM05D000001 ORTHO05D000003 2.5e-08 65.1 204 26.5
Sp5g21370 Schrenkiella parvula HOM05D007291 ORTHO05D009038 2.5e-08 65.1 157 28.0
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 2.5e-08 65.1 265 24.9
Atru.BG.2.p Acer truncatum HOM05D000001 ORTHO05D000003 3.3e-08 64.7 140 29.3
C02p21950 Brassica napus HOM05D007291 ORTHO05D009038 3.3e-08 64.7 222 24.8
BolC2t08326H Brassica oleracea HOM05D007291 ORTHO05D009038 3.3e-08 64.7 222 24.8
BolC5t29723H Brassica oleracea HOM05D002890 ORTHO05D009847 3.3e-08 64.7 189 28.0
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 3.3e-08 64.7 186 29.0
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 3.3e-08 64.7 177 26.0
MBI01_g10232_MAGBIO Magnolia biondii HOM05D007455 ORTHO05D009431 4.3e-08 64.3 185 25.4
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 4.3e-08 64.3 187 28.9
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 4.3e-08 64.3 246 21.5
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 4.3e-08 64.3 165 30.9
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 4.3e-08 64.3 180 25.6
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 5.6e-08 63.9 190 26.8
Cfa008462 Carpinus fangiana HOM05D000001 ORTHO05D000003 7.3e-08 63.5 190 25.3
ClCG11G001180 Citrullus lanatus HOM05D007347 ORTHO05D009296 7.3e-08 63.5 137 32.1
ECA236G0534 Erigeron canadensis HOM05D002890 ORTHO05D009847 7.3e-08 63.5 166 30.1
Sabra17G0060800 Salix brachista HOM05D007358 ORTHO05D009117 7.3e-08 63.5 150 29.3
ATR0751G228 Amborella trichopoda HOM05D007390 ORTHO05D009114 9.5e-08 63.2 162 29.0
Lj6g0024647 Lotus japonicus HOM05D000001 ORTHO05D000003 1.2e-07 62.8 147 24.5
AagrBONN_evm.TU.Sc2ySwM_362.2765 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-07 62.4 323 22.6
CiPaw.13G151600 Carya illinoinensis HOM05D007455 ORTHO05D009431 1.6e-07 62.4 158 31.6
Thhalv10007012m.g Eutrema salsugineum HOM05D002890 ORTHO05D009847 1.6e-07 62.4 206 26.7
Peaxi162Scf00310g00083 Petunia axillaris HOM05D000001 ORTHO05D009494 1.6e-07 62.4 156 26.3
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 1.6e-07 62.4 208 24.5
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 2.1e-07 62.0 246 23.6
Ciclev10011245m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.1e-07 62.0 157 28.7
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 2.1e-07 62.0 180 25.6
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 2.1e-07 62.0 180 25.6
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 2.1e-07 62.0 150 29.3
C05p09820 Brassica napus HOM05D002890 ORTHO05D009847 2.8e-07 61.6 192 28.1
CiPaw.01G118600 Carya illinoinensis HOM05D007291 ORTHO05D009038 2.8e-07 61.6 230 24.8
Ca_17259_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.8e-07 61.6 147 25.9
Ca_17281_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.8e-07 61.6 147 25.9
Ca_24411_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.8e-07 61.6 149 27.5
Ca_30961_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.8e-07 61.6 149 27.5
MD07G1057900 Malus domestica HOM05D002890 ORTHO05D009847 2.8e-07 61.6 237 25.7
Manes.13G125000 Manihot esculenta HOM05D000001 ORTHO05D000003 2.8e-07 61.6 156 25.0
Nn3g18372 Nelumbo nucifera HOM05D007545 ORTHO05D009579 3.6e-07 61.2 112 33.9
AT1G11710 Arabidopsis thaliana HOM05D002890 ORTHO05D009847 4.7e-07 60.8 203 26.6
CsaV3_5G013240 Cucumis sativus L. HOM05D007347 ORTHO05D009296 4.7e-07 60.8 137 32.1
Medtr1g054655 Medicago truncatula HOM05D010072 ORTHO05D011797 4.7e-07 60.8 297 23.9
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 4.7e-07 60.8 235 24.7
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 6.2e-07 60.5 222 25.2
SEGI_16813 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 6.2e-07 60.5 158 27.2
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 8.0e-07 60.1 216 25.5
Lj2g0016301 Lotus japonicus HOM05D007291 ORTHO05D009038 8.0e-07 60.1 238 27.3
Nitab4.5_0001361g0100 Nicotiana tabacum HOM05D007675 ORTHO05D009699 8.0e-07 60.1 191 25.1
QL09p019182 Quercus lobata HOM05D000001 ORTHO05D009335 8.0e-07 60.1 169 27.8
Aa31LG1G3060 Aethionema arabicum HOM05D002890 ORTHO05D009847 1.1e-06 59.7 178 27.5
arahy.Tifrunner.gnm1.ann1.U9TVSZ Arachis hypogaea HOM05D000001 ORTHO05D000003 1.1e-06 59.7 149 26.8
BcaB05g24168 Brassica carinata HOM05D007291 ORTHO05D009038 1.1e-06 59.7 161 26.1
Cpa.g.sc50.142 Carica papaya HOM05D002890 ORTHO05D009847 1.1e-06 59.7 121 34.7
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 1.1e-06 59.7 216 25.5
MELO3C026797.2 Cucumis melo HOM05D007347 ORTHO05D009296 1.1e-06 59.7 132 32.6
Eucgr.C02447 Eucalyptus grandis HOM05D007455 ORTHO05D009431 1.1e-06 59.7 175 29.1
HanXRQChr06g0182581 Helianthus annuus HOM05D007455 ORTHO05D009431 1.1e-06 59.7 161 27.3
Pp3c3_24770 Physcomitrium patens HOM05D000001 ORTHO05D000003 1.1e-06 59.7 156 25.0
Sed0025332 Sechium edule HOM05D007455 ORTHO05D009431 1.1e-06 59.7 183 29.0
Carub.0001s1135 Capsella rubella HOM05D002890 ORTHO05D009847 1.4e-06 59.3 212 27.4
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 1.4e-06 59.3 216 25.0
Haze_20536 Corylus avellana HOM05D002890 ORTHO05D009847 1.4e-06 59.3 155 30.3
Nitab4.5_0000876g0030 Nicotiana tabacum HOM05D007675 ORTHO05D009699 1.4e-06 59.3 187 25.1
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 1.4e-06 59.3 184 25.5
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 1.4e-06 59.3 324 24.1
CANSAT64G0714 Cannabis sativa HOM05D007347 ORTHO05D009296 1.8e-06 58.9 164 29.9
HanXRQChr14g0448021 Helianthus annuus HOM05D007347 ORTHO05D009296 1.8e-06 58.9 132 29.5
Lsat_1_v5_gn_2_86161 Lactuca sativa HOM05D007347 ORTHO05D009296 1.8e-06 58.9 132 29.5
Nn5g29409 Nelumbo nucifera HOM05D007063 ORTHO05D008822 1.8e-06 58.9 219 22.8
SEGI_33166 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 1.8e-06 58.9 152 30.3
unitig_21.g20398 Utricularia gibba HOM05D007291 ORTHO05D009038 1.8e-06 58.9 367 19.1
BraA06t23721Z Brassica rapa HOM05D000001 ORTHO05D000003 2.3e-06 58.5 149 28.9
CSS0041055 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 2.3e-06 58.5 157 26.1
Gohir.D07G124600 Gossypium hirsutum HOM05D007455 ORTHO05D009431 2.3e-06 58.5 161 29.2
Lj1C286T3 Lonicera japonica HOM05D007455 ORTHO05D009431 2.3e-06 58.5 163 25.2
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 2.3e-06 58.5 160 26.2
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 2.3e-06 58.5 151 29.1
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 2.3e-06 58.5 151 29.1
Ca_04155_v3 Cicer arietinum L. HOM05D007358 ORTHO05D009117 3.1e-06 58.2 93 29.0
ClCG03G013270 Citrullus lanatus HOM05D000001 ORTHO05D010582 3.1e-06 58.2 152 28.3
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 3.1e-06 58.2 164 26.8
SalBow2G2822 Salvia bowleyana HOM05D006819 ORTHO05D008763 3.1e-06 58.2 239 23.8
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 3.1e-06 58.2 240 23.3
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 3.1e-06 58.2 167 25.7
BcaC05g24723 Brassica carinata HOM05D000001 ORTHO05D000003 4.0e-06 57.8 148 29.1
C05p06110 Brassica napus HOM05D000001 ORTHO05D000003 4.0e-06 57.8 148 29.1
BolC5t29370H Brassica oleracea HOM05D000001 ORTHO05D000003 4.0e-06 57.8 148 29.1
Ciclev10004307m.g Citrus clementina HOM05D000001 ORTHO05D000003 4.0e-06 57.8 157 26.1
ECA232G4213 Erigeron canadensis HOM05D007455 ORTHO05D009431 4.0e-06 57.8 141 29.1
HanXRQChr10g0316371 Helianthus annuus HOM05D000001 ORTHO05D000003 4.0e-06 57.8 234 23.9
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 4.0e-06 57.8 196 24.0
Lsat_1_v5_gn_7_16080 Lactuca sativa HOM05D002890 ORTHO05D009847 4.0e-06 57.8 164 26.2
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 4.0e-06 57.8 155 25.8
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 5.2e-06 57.4 181 24.9
AL1G22850 Arabidopsis lyrata HOM05D002890 ORTHO05D009847 5.2e-06 57.4 211 27.0
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 5.2e-06 57.4 188 23.9
FAN23G0923 Fragaria x ananassa HOM05D007347 ORTHO05D009296 5.2e-06 57.4 132 28.8
FAN26G2104 Fragaria x ananassa HOM05D007347 ORTHO05D009296 5.2e-06 57.4 132 28.8
Gorai.009G366400 Gossypium raimondii HOM05D007291 ORTHO05D009038 5.2e-06 57.4 186 26.3
Peaxi162Scf01229g00021 Petunia axillaris HOM05D007455 ORTHO05D009431 5.2e-06 57.4 120 31.7
QL06p007153 Quercus lobata HOM05D007347 ORTHO05D009296 5.2e-06 57.4 143 30.1
TPR.G37999 Trifolium pratense HOM05D000001 ORTHO05D000003 5.2e-06 57.4 149 25.5
AagrBONN_evm.TU.Sc2ySwM_344.177 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.8e-06 57.0 158 27.8
Duzib235G0962 Durio zibethinus HOM05D000001 ORTHO05D000003 6.8e-06 57.0 150 24.0
PGR142G2842 Punica granatum HOM05D000001 ORTHO05D000003 6.8e-06 57.0 139 25.2
EL10Ac3g05477 Beta vulgaris HOM05D000001 ORTHO05D000003 8.9e-06 56.6 153 25.5
FAN23G0930 Fragaria x ananassa HOM05D007347 ORTHO05D009296 8.9e-06 56.6 132 28.8
FAN26G0753 Fragaria x ananassa HOM05D007545 ORTHO05D009579 8.9e-06 56.6 192 26.6
Nn1g02697 Nelumbo nucifera HOM05D000001 ORTHO05D000003 8.9e-06 56.6 200 23.0
PGSC0003DMG400008266 Solanum tuberosum HOM05D007675 ORTHO05D009699 8.9e-06 56.6 199 24.1
TWI73G0656 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 8.9e-06 56.6 156 25.6


User provided reference genes

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