Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 5.1e-165 584.3 293 100.0
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.2e-103 379.0 288 63.9
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.7e-96 356.7 302 57.9
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.0e-93 345.9 302 58.3
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.7e-91 340.1 295 58.6
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 3.7e-91 339.0 292 55.8
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 1.1e-90 337.4 309 57.0
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 7.8e-89 331.3 300 55.7
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 1.7e-88 330.1 316 51.9
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.3e-88 329.7 300 55.3
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 2.9e-88 329.3 316 56.3
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 6.6e-88 328.2 302 54.3
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 8.6e-88 327.8 308 53.9
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 1.5e-87 327.0 313 51.1
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 7.3e-87 324.7 315 54.3
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 7.3e-87 324.7 318 51.9
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 1.2e-86 323.9 310 51.6
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 1.2e-86 323.9 304 52.3
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 1.6e-86 323.6 300 54.7
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 2.1e-86 323.2 320 52.5
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 2.1e-86 323.2 311 55.6
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 4.7e-86 322.0 292 52.7
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 6.1e-86 321.6 326 50.9
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 1.8e-85 320.1 307 54.4
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.8e-85 320.1 325 50.2
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 3.1e-85 319.3 294 52.4
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 3.1e-85 319.3 308 54.2
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 1.2e-84 317.4 329 50.8
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 2.0e-84 316.6 313 51.4
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 5.8e-84 315.1 297 53.2
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 7.5e-84 314.7 283 53.7
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 7.5e-84 314.7 306 50.7
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 9.8e-84 314.3 283 53.7
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.9e-83 312.8 350 48.3
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 2.9e-83 312.8 333 52.3
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 6.4e-83 311.6 286 53.1
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 1.9e-82 310.1 347 48.1
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 3.2e-82 309.3 312 50.6
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 3.2e-82 309.3 312 51.0
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 7.0e-82 308.1 321 51.7
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 7.0e-82 308.1 347 47.3
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 7.0e-82 308.1 340 49.1
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 1.6e-81 307.0 293 52.6
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 1.6e-81 307.0 310 50.6
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 3.5e-81 305.8 318 49.7
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 3.5e-81 305.8 293 53.2
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 7.8e-81 304.7 344 47.1
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 1.0e-80 304.3 333 48.9
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 1.7e-80 303.5 294 52.0
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 1.7e-80 303.5 313 51.4
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 1.7e-80 303.5 327 48.3
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 2.3e-80 303.1 338 49.1
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 3.0e-80 302.8 314 52.9
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 3.0e-80 302.8 313 52.4
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 6.6e-80 301.6 290 53.8
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 1.1e-79 300.8 304 53.0
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 1.5e-79 300.4 312 49.0
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 3.3e-79 299.3 346 50.9
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 1.2e-78 297.4 355 46.2
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 3.6e-78 295.8 311 50.8
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 4.7e-78 295.4 314 52.5
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 8.0e-78 294.7 296 54.1
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 4.0e-77 292.4 368 43.2
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 8.9e-77 291.2 283 51.9
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 1.2e-76 290.8 309 50.8
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 3.4e-76 289.3 296 51.4
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 1.7e-75 287.0 242 61.2
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 2.9e-75 286.2 281 54.8
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 1.4e-74 283.9 313 48.2
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 1.9e-74 283.5 306 49.3
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 2.4e-74 283.1 348 44.0
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 9.2e-74 281.2 314 49.0
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 3.5e-73 279.3 310 47.1
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 4.6e-73 278.9 328 47.9
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 6.0e-73 278.5 310 48.7
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 7.8e-73 278.1 300 48.3
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 3.0e-72 276.2 307 49.2
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 1.9e-71 273.5 314 49.0
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 2.5e-71 273.1 308 47.7
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 2.5e-71 273.1 308 47.7
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 3.3e-71 272.7 308 47.4
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 4.3e-71 272.3 296 51.7
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 1.6e-70 270.4 316 50.0
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 2.1e-70 270.0 324 44.1
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 3.6e-70 269.2 325 45.2
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 1.4e-69 267.3 316 49.4
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 1.4e-69 267.3 324 47.2
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 1.4e-69 267.3 329 45.0
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.8e-69 266.9 304 46.1
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 2.3e-69 266.5 316 46.8
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 8.9e-69 264.6 282 49.6
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 3.4e-68 262.7 322 47.8
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 4.4e-68 262.3 335 44.2
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 4.4e-68 262.3 319 48.0
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 7.5e-68 261.5 316 45.9
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 7.5e-68 261.5 316 45.9
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 7.5e-68 261.5 316 45.9
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 1.3e-67 260.8 301 48.8
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 1.3e-67 260.8 316 45.9
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 1.7e-67 260.4 277 49.5
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 4.9e-67 258.8 364 42.6
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 8.3e-67 258.1 307 47.2
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 9.2e-66 254.6 361 40.4
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 2.1e-65 253.4 256 54.7
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 2.2e-59 233.4 329 39.5
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 1.1e-58 231.1 330 39.7
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 1.9e-58 230.3 334 44.3
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 1.6e-54 217.2 319 41.4
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 4.0e-53 212.6 299 43.5
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.4e-50 204.1 208 50.0
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 3.2e-50 203.0 313 37.7
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 1.8e-45 187.2 383 32.4
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 1.5e-44 184.1 242 45.0
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 3.2e-42 176.4 125 63.2
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 9.3e-42 174.9 146 56.8
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 1.6e-38 164.1 129 56.6
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 5.3e-37 159.1 141 55.3
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 4.5e-36 156.0 282 35.1
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 3.5e-33 146.4 268 35.8
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 3.0e-32 143.3 286 32.9
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.5e-31 141.0 282 34.0
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 2.8e-30 136.7 141 46.8
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 4.5e-28 129.4 144 49.3
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 3.5e-25 119.8 300 32.0
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 4.6e-25 119.4 207 37.2
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.2e-22 110.5 98 52.0
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 2.3e-08 63.9 135 31.1
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 3.0e-08 63.5 116 37.1
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 8.8e-08 62.0 59 54.2
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 1.7e-06 57.8 48 52.1
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 2.8e-06 57.0 109 39.4
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 2.8e-06 57.0 86 41.9
Eucgr.K03259 Eucalyptus grandis HOM05D007363 ORTHO05D009018 6.3e-06 55.8 110 37.3
Eucgr.L02952 Eucalyptus grandis HOM05D007363 ORTHO05D009018 6.3e-06 55.8 110 37.3


User provided reference genes

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