Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 0.0e+00 4271.1 2135 100.0
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 0.0e+00 1446.4 2247 40.8
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 0.0e+00 1390.6 2236 39.1
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 0.0e+00 1280.4 2245 37.8
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 0.0e+00 1269.6 2256 37.5
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 0.0e+00 1262.7 2241 36.8
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 0.0e+00 1207.6 2219 36.6
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 0.0e+00 1204.5 2195 37.5
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 0.0e+00 1196.0 2248 36.5
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 0.0e+00 1191.0 2189 37.1
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 0.0e+00 1187.6 2215 36.9
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 0.0e+00 1181.4 2157 37.1
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 0.0e+00 1180.2 2245 36.1
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1179.5 2212 36.6
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 0.0e+00 1169.1 2237 36.5
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 0.0e+00 1156.7 2179 35.9
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 0.0e+00 1150.2 2228 35.2
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 0.0e+00 1133.6 2163 36.3
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 0.0e+00 1132.5 2206 35.3
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1124.0 2175 35.9
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 0.0e+00 1124.0 2174 35.9
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 0.0e+00 1118.2 2219 34.8
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1116.7 2262 34.5
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 0.0e+00 1116.3 2265 34.9
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1112.8 2180 35.6
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 0.0e+00 1109.4 2191 36.1
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 0.0e+00 1104.7 2218 35.2
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 0.0e+00 1098.2 2211 35.1
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 0.0e+00 1093.2 2209 34.9
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1078.5 2168 34.6
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 0.0e+00 1078.2 2168 35.3
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1077.8 2169 34.4
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 2.2e-310 1070.1 2219 35.4
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 1.1e-309 1067.8 2156 35.8
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 1.9e-309 1067.0 2257 34.6
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 5.5e-309 1065.4 2205 35.7
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 2.1e-308 1063.5 2218 35.2
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 5.1e-307 1058.9 2192 34.0
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 1.9e-306 1057.0 2126 34.5
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 4.8e-305 1052.4 2166 34.3
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 1.1e-301 1041.2 2167 34.0
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 7.4e-298 1028.5 2186 34.0
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 5.0e-294 1015.8 2149 33.4
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 1.5e-290 1004.2 1759 37.4
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 3.3e-290 1003.0 2194 33.5
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 5.7e-290 1002.3 2225 33.5
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 2.8e-289 1000.0 2230 32.8
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 6.3e-289 998.8 2161 33.8
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 5.9e-287 992.3 2114 33.6
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 6.1e-284 982.2 2166 32.8
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 7.5e-282 975.3 2237 32.5
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 1.8e-280 970.7 2139 32.7
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 4.1e-280 969.5 2164 33.3
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 4.1e-280 969.5 2213 32.7
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 1.2e-279 968.0 2226 33.5
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 1.6e-279 967.6 2126 33.6
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 1.6e-279 967.6 2152 33.7
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 8.5e-278 961.8 2149 33.6
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 8.0e-276 955.3 2161 32.9
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 6.8e-275 952.2 2170 32.7
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 7.5e-274 948.7 1569 38.6
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 2.2e-273 947.2 2172 32.8
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 1.2e-271 941.4 2158 32.5
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 1.2e-271 941.4 2210 32.3
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 5.9e-271 939.1 2158 32.7
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 1.1e-269 934.9 2221 33.0
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 4.7e-268 929.5 1823 36.1
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 1.5e-266 924.5 2137 32.2
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 9.8e-266 921.8 2171 32.3
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 1.7e-265 921.0 2198 32.2
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 8.3e-265 918.7 2151 33.1
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 2.7e-263 913.7 2158 32.3
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 8.6e-262 908.7 2149 32.2
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 2.0e-255 887.5 2185 31.5
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 3.3e-253 880.2 2147 31.5
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 2.3e-251 874.0 2158 31.6
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 2.2e-249 867.5 2151 31.5
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 1.1e-248 865.1 2141 31.1
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 4.1e-248 863.2 2214 30.8
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 7.8e-247 859.0 2149 31.5
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 7.8e-247 859.0 2149 31.5
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 1.0e-246 858.6 2156 31.4
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 4.7e-244 849.7 2122 31.6
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 2.1e-239 834.3 2185 30.8
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 6.0e-239 832.8 2147 30.9
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 1.4e-235 821.6 1715 34.8
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 6.8e-235 819.3 1829 32.8
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 2.7e-231 807.4 2084 30.8
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 6.6e-230 802.7 2163 30.6
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 6.2e-228 796.2 1700 34.2
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 3.7e-196 690.6 1510 33.6
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 1.2e-191 675.6 1598 32.4
AagrBONN_evm.TU.Sc2ySwM_362.822 Anthoceros agrestis HOM05D004890 ORTHO05D005869 1.6e-154 552.4 2321 24.9
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 1.3e-153 549.3 1481 30.5
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 2.7e-146 525.0 1331 30.1
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 5.9e-146 523.9 2353 23.9
Pp3c13_15040 Physcomitrium patens HOM05D004890 ORTHO05D005869 1.8e-142 512.3 2231 25.1
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 5.6e-136 490.7 1037 32.0
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 5.1e-129 467.6 536 47.6
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 8.6e-129 466.8 707 39.2
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 8.9e-126 456.8 795 38.6
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 5.8e-125 454.1 1179 30.4
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 1.6e-103 382.9 696 34.9
SEGI_38665 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 5.7e-88 331.3 716 34.5
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 2.1e-87 329.3 680 34.7
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 7.2e-75 287.7 855 29.5
Glyma.08G231200 Glycine max HOM05D004890 ORTHO05D005869 5.1e-73 281.6 587 34.4
SMO164G0051 Selaginella moellendorffii HOM05D004890 ORTHO05D005869 3.1e-70 272.3 1993 21.3
HPP92_020638 Vanilla planifolia HOM05D004890 ORTHO05D005869 5.1e-65 255.0 763 27.5
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 6.1e-50 204.9 171 57.3
Oeu033530.1 Olea europaea HOM05D004890 ORTHO05D005869 1.4e-49 203.8 418 34.0
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 1.2e-48 200.7 664 25.6
RcHm_v2.0_Chr6g0245531 Rosa chinensis HOM05D004890 ORTHO05D005869 4.5e-45 188.7 427 31.9
SHI05679 Sapria himalayana HOM05D004890 ORTHO05D005869 8.3e-39 167.9 531 28.6
SEGI_39969 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 2.4e-30 139.8 124 53.2
MD10G1117300 Malus domestica HOM05D004890 ORTHO05D005869 3.0e-28 132.9 244 36.5
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 1.9e-27 130.2 334 30.5
Dinv04971 Davidia involucrata HOM05D004890 ORTHO05D005869 9.5e-27 127.9 312 32.1
Psat7g017880 Pisum sativum HOM05D001673 ORTHO05D029933 2.1e-26 126.7 209 38.3
Ah.01g022440 Amaranthus hybridus HOM05D004890 ORTHO05D005869 8.9e-25 121.3 435 27.6
A07p11080 Brassica napus HOM05D004890 ORTHO05D005869 1.5e-24 120.6 114 54.4
BolC5t32490H Brassica oleracea HOM05D004890 ORTHO05D005869 7.5e-24 118.2 100 59.0
CBR_g39037 Chara braunii HOM05D004890 ORTHO05D005869 2.9e-23 116.3 171 36.3
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 4.9e-23 115.5 136 50.0
RcHm_v2.0_Chr6g0245351 Rosa chinensis HOM05D004890 ORTHO05D005869 6.4e-23 115.2 206 34.0
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 7.0e-22 111.7 113 51.3
C05p37500 Brassica napus HOM05D004890 ORTHO05D005869 4.6e-21 109.0 88 59.1
BolC7t43608H Brassica oleracea HOM05D004890 ORTHO05D005869 2.3e-20 106.7 93 57.0
MD10G1117600 Malus domestica HOM05D004890 ORTHO05D005869 6.6e-20 105.1 104 50.0
A01p19080 Brassica napus HOM05D004890 ORTHO05D005869 1.9e-19 103.6 100 54.0
BraA01t01851Z Brassica rapa HOM05D004890 ORTHO05D005869 7.3e-19 101.7 93 55.9
Glyma.14G115300 Glycine max HOM05D004890 ORTHO05D005869 6.2e-18 98.6 86 58.1
RcHm_v2.0_Chr6g0245541 Rosa chinensis HOM05D004890 ORTHO05D005869 1.1e-17 97.8 130 45.4
BcaC05g27755 Brassica carinata HOM05D004890 ORTHO05D005869 1.1e-14 87.8 56 67.9
BolC1t00884H Brassica oleracea HOM05D004890 ORTHO05D005869 2.1e-13 83.6 118 45.8
RcHm_v2.0_Chr6g0244961 Rosa chinensis HOM05D004890 ORTHO05D005869 1.0e-12 81.3 171 35.1
C01p08930 Brassica napus HOM05D004890 ORTHO05D005869 2.3e-12 80.1 132 41.7
C01p08960 Brassica napus HOM05D004890 ORTHO05D005869 2.5e-11 76.6 51 66.7
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 9.5e-11 74.7 119 35.3
RcHm_v2.0_Chr6g0244901 Rosa chinensis HOM05D004890 ORTHO05D005869 1.4e-09 70.9 82 46.3
RcHm_v2.0_Chr6g0244891 Rosa chinensis HOM05D004890 ORTHO05D005869 2.0e-08 67.0 98 37.8
RcHm_v2.0_Chr6g0244921 Rosa chinensis HOM05D004890 ORTHO05D005869 3.4e-08 66.2 119 38.7
SHI05678 Sapria himalayana HOM05D004890 ORTHO05D005869 1.7e-07 63.9 120 30.8
RcHm_v2.0_Chr6g0245361 Rosa chinensis HOM05D004890 ORTHO05D005869 4.9e-07 62.4 154 27.9
MD10G1117400 Malus domestica HOM05D004890 ORTHO05D005869 5.4e-06 58.9 87 37.9


User provided reference genes

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