Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 5.7e-124 447.6 223 100.0
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 2.4e-74 282.7 181 74.0
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 1.2e-73 280.4 165 80.6
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 1.2e-73 280.4 186 72.0
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 2.0e-73 279.6 204 67.2
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 2.9e-72 275.8 181 72.4
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 6.6e-72 274.6 165 77.0
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 1.9e-71 273.1 158 79.7
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 7.3e-71 271.2 197 67.0
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 9.5e-71 270.8 195 67.2
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 1.2e-70 270.4 166 77.1
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 1.6e-70 270.0 178 71.9
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 2.1e-70 269.6 203 62.6
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.8e-70 269.2 182 70.9
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 3.6e-70 268.9 183 71.0
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 6.1e-70 268.1 189 68.8
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 1.4e-69 266.9 173 72.8
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.8e-69 266.5 173 70.5
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 3.0e-69 265.8 197 65.5
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 3.0e-69 265.8 177 70.6
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 6.8e-69 264.6 185 70.8
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.6e-68 262.7 173 69.9
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 4.4e-68 261.9 170 71.2
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 5.7e-68 261.5 194 67.0
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 1.7e-67 260.0 179 70.4
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 1.7e-67 260.0 179 70.9
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 1.7e-67 260.0 166 72.9
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 2.9e-67 259.2 183 69.9
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 4.9e-67 258.5 160 78.1
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 6.4e-67 258.1 179 72.6
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 6.4e-67 258.1 160 73.8
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 1.8e-66 256.5 183 69.9
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 1.8e-66 256.5 164 75.6
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 2.4e-66 256.1 164 75.6
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 3.2e-66 255.8 175 68.6
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 3.2e-66 255.8 185 68.6
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.1e-66 255.4 171 73.7
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 7.0e-66 254.6 170 70.0
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 7.0e-66 254.6 171 73.7
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 9.2e-66 254.2 182 68.1
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 9.2e-66 254.2 190 63.2
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 1.6e-65 253.4 200 66.0
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.6e-65 253.4 171 73.7
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 1.6e-65 253.4 181 67.4
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 2.0e-65 253.1 164 70.7
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 2.0e-65 253.1 166 74.1
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 4.6e-65 251.9 181 67.4
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 7.8e-65 251.1 181 69.1
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 7.8e-65 251.1 175 68.6
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 1.0e-64 250.8 160 74.4
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 2.3e-64 249.6 171 73.7
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 2.3e-64 249.6 169 69.2
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 2.3e-64 249.6 166 71.1
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 3.0e-64 249.2 184 65.8
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 3.0e-64 249.2 168 70.8
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 3.9e-64 248.8 161 73.9
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 5.0e-64 248.4 187 65.2
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 6.6e-64 248.1 166 69.3
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 6.6e-64 248.1 168 73.2
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 1.1e-63 247.3 179 65.9
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 1.9e-63 246.5 160 71.2
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 5.6e-63 245.0 176 69.9
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 1.6e-62 243.4 167 65.9
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 3.6e-62 242.3 183 65.6
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 6.2e-62 241.5 163 71.8
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 1.0e-61 240.7 183 65.0
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.4e-61 240.4 139 81.3
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 1.8e-61 240.0 181 68.5
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 2.3e-61 239.6 181 64.1
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 3.1e-61 239.2 177 65.5
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 3.1e-61 239.2 173 64.7
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 5.2e-61 238.4 185 63.2
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 1.2e-60 237.3 161 70.8
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 1.2e-60 237.3 160 73.1
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.2e-60 237.3 193 62.7
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 9.8e-60 234.2 196 63.3
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 2.2e-59 233.0 196 62.8
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 3.7e-59 232.3 156 67.9
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 6.4e-59 231.5 196 62.2
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 6.4e-59 231.5 156 71.2
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 6.4e-59 231.5 156 71.2
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 8.3e-59 231.1 181 66.3
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 1.1e-58 230.7 196 62.2
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 1.1e-58 230.7 181 66.3
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 1.1e-58 230.7 173 69.9
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 1.1e-58 230.7 183 65.0
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 1.4e-58 230.3 178 67.4
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 1.9e-58 229.9 175 67.4
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 7.0e-58 228.0 184 64.7
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 4.6e-57 225.3 178 60.7
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 6.6e-56 221.5 155 73.5
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 8.6e-56 221.1 177 64.4
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 4.3e-55 218.8 144 70.8
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 4.3e-55 218.8 138 70.3
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 5.6e-55 218.4 144 72.2
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.6e-55 218.4 140 74.3
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 9.5e-55 217.6 179 63.1
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 9.5e-55 217.6 143 72.7
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 4.4e-52 208.8 138 72.5
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 3.2e-50 202.6 193 53.4
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 7.8e-49 198.0 209 50.7
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 1.0e-48 197.6 193 52.8
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 7.3e-47 191.4 163 60.1
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 9.5e-47 191.0 177 57.6
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 8.9e-45 184.5 200 48.0
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 4.4e-44 182.2 197 51.3
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 4.9e-43 178.7 138 63.8
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.1e-42 177.6 183 52.5
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 5.4e-42 175.3 207 49.3
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.2e-38 164.1 101 76.2
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 3.4e-36 156.0 101 75.2
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 2.7e-33 146.4 132 56.8
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 3.5e-33 146.0 101 69.3
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 2.3e-32 143.3 123 59.3
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.0e-32 142.9 84 79.8
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 1.1e-31 141.0 106 63.2
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.8e-30 135.6 77 84.4
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.1e-26 124.4 152 44.1
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.4e-26 124.0 102 54.9
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 5.4e-26 122.1 83 68.7
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 5.4e-26 122.1 95 64.2
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.0e-24 117.9 95 62.1
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 5.1e-24 115.5 76 69.7
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.1e-21 107.8 87 60.9
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 4.6e-17 92.4 73 57.5
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 7.9e-17 91.7 130 44.6
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 4.3e-15 85.9 95 52.6
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 1.8e-13 80.5 70 55.7
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 2.9e-11 73.2 62 58.1
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 9.3e-10 68.2 44 68.2
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 6.7e-08 62.0 59 52.5


User provided reference genes

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