Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0810G084 Amborella trichopoda HOM05D003206 ORTHO05D017170 2.1e-67 258.8 128 100.0
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 1.4e-58 229.6 127 90.6
MD09G1222300 Malus domestica HOM05D003206 ORTHO05D005207 5.7e-52 207.6 127 79.5
MD17G1215600 Malus domestica HOM05D003206 ORTHO05D005207 7.4e-52 207.2 127 79.5
Prupe.3G091800 Prunus persica HOM05D003206 ORTHO05D005207 2.8e-51 205.3 127 78.0
GSVIVG01017422001 Vitis vinifera HOM05D003206 ORTHO05D005207 4.8e-51 204.5 127 75.6
Oeu004214.1 Olea europaea HOM05D003206 ORTHO05D005207 6.2e-51 204.1 127 75.6
Nn2g12167 Nelumbo nucifera HOM05D003206 ORTHO05D005207 1.4e-50 203.0 127 75.6
Nn8g39607 Nelumbo nucifera HOM05D003206 ORTHO05D005207 1.4e-50 203.0 127 76.4
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 3.1e-50 201.8 127 74.8
Oeu018801.1 Olea europaea HOM05D003206 ORTHO05D005207 4.1e-50 201.4 127 74.8
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 4.1e-50 201.4 127 74.0
Atru.chr1.2868 Acer truncatum HOM05D003206 ORTHO05D005207 5.3e-50 201.1 127 74.0
Haze_12952 Corylus avellana HOM05D003206 ORTHO05D005207 5.3e-50 201.1 127 74.8
RcHm_v2.0_Chr2g0134571 Rosa chinensis HOM05D003206 ORTHO05D005207 5.3e-50 201.1 127 74.8
TAR626G1759 Trochodendron aralioides HOM05D003206 ORTHO05D005207 5.3e-50 201.1 127 75.6
Cc04_g04590 Coffea canephora HOM05D003206 ORTHO05D005207 6.9e-50 200.7 126 73.0
Migut.I00744 Erythranthe guttata HOM05D003206 ORTHO05D005207 2.6e-49 198.7 126 72.2
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 3.4e-49 198.4 127 74.0
TAR383G0666 Trochodendron aralioides HOM05D003206 ORTHO05D005207 3.4e-49 198.4 127 72.4
Aqoxy133s002 Aquilegia oxysepala HOM05D003206 ORTHO05D017170 4.5e-49 198.0 127 74.0
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 4.5e-49 198.0 127 74.0
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 4.5e-49 198.0 127 70.9
MSTRG.4700 Avicennia marina HOM05D003206 ORTHO05D005207 5.8e-49 197.6 127 71.7
Eucgr.J03080 Eucalyptus grandis HOM05D003206 ORTHO05D005207 7.6e-49 197.2 127 72.4
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 7.6e-49 197.2 126 73.8
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 1.0e-48 196.8 127 71.7
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.0e-48 196.8 127 71.7
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.0e-48 196.8 127 71.7
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.0e-48 196.8 127 71.7
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.0e-48 196.8 127 71.7
Nitab4.5_0003072g0120 Nicotiana tabacum HOM05D003206 ORTHO05D005207 1.0e-48 196.8 127 72.4
Nitab4.5_0004013g0050 Nicotiana tabacum HOM05D003206 ORTHO05D005207 1.0e-48 196.8 127 72.4
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 1.3e-48 196.4 127 74.0
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 1.3e-48 196.4 127 73.2
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 1.3e-48 196.4 127 70.1
Peaxi162Scf00553g00628 Petunia axillaris HOM05D003206 ORTHO05D005207 1.3e-48 196.4 127 71.7
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 2.2e-48 195.7 127 72.4
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 2.2e-48 195.7 127 70.9
COL.COLO4_11866 Corchorus olitorius HOM05D003206 ORTHO05D005207 2.9e-48 195.3 127 70.9
Sopen03g036390 Solanum pennellii HOM05D003206 ORTHO05D005207 2.9e-48 195.3 127 71.7
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 3.8e-48 194.9 127 73.2
Dinv30630 Davidia involucrata HOM05D003206 ORTHO05D005207 3.8e-48 194.9 127 73.2
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 3.8e-48 194.9 127 70.9
ECA247G4132 Erigeron canadensis HOM05D003206 ORTHO05D005207 5.0e-48 194.5 127 72.4
SalBow6G0819 Salvia bowleyana HOM05D003206 ORTHO05D005207 5.0e-48 194.5 127 72.4
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 5.0e-48 194.5 127 71.7
unitig_27.g24951 Utricularia gibba HOM05D003206 ORTHO05D017170 6.5e-48 194.1 127 69.3
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 8.4e-48 193.7 127 72.4
Solyc03g117490.4 Solanum lycopersicum HOM05D003206 ORTHO05D005207 8.4e-48 193.7 127 70.9
PGSC0003DMG400014144 Solanum tuberosum HOM05D003206 ORTHO05D005207 8.4e-48 193.7 127 70.9
TWI12G0864 Tripterygium wilfordii HOM05D003206 ORTHO05D005207 1.1e-47 193.4 127 69.3
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 1.4e-47 193.0 127 70.9
Gohir.A06G115200 Gossypium hirsutum HOM05D003206 ORTHO05D005207 1.4e-47 193.0 127 71.7
Gorai.010G138000 Gossypium raimondii HOM05D003206 ORTHO05D005207 1.4e-47 193.0 127 71.7
Potri.003G030900 Populus trichocarpa HOM05D003206 ORTHO05D005207 1.4e-47 193.0 127 70.9
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 1.4e-47 193.0 127 70.9
Actinidia03225 Actinidia chinensis HOM05D003206 ORTHO05D005207 1.9e-47 192.6 127 70.9
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 1.9e-47 192.6 127 72.4
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 1.9e-47 192.6 127 73.2
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 1.9e-47 192.6 127 70.9
AUR62016312 Chenopodium quinoa HOM05D003206 ORTHO05D005207 2.5e-47 192.2 127 72.4
Duzib192G0877 Durio zibethinus HOM05D003206 ORTHO05D005207 2.5e-47 192.2 127 70.1
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 2.5e-47 192.2 138 68.8
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 3.2e-47 191.8 127 71.7
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 3.2e-47 191.8 127 71.7
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 4.2e-47 191.4 127 68.5
Actinidia18218 Actinidia chinensis HOM05D003206 ORTHO05D005207 5.5e-47 191.0 127 70.1
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 5.5e-47 191.0 127 69.3
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 5.5e-47 191.0 127 70.1
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 5.5e-47 191.0 127 68.5
CAN.G407.13 Capsicum annuum HOM05D003206 ORTHO05D005207 7.1e-47 190.7 127 69.3
Rhsim08G0211000 Rhododendron simsii HOM05D003206 ORTHO05D005207 9.3e-47 190.3 127 70.9
THA.LOC104812468 Tarenaya hassleriana HOM05D003206 ORTHO05D005207 9.3e-47 190.3 127 70.9
Sed0019835 Sechium edule HOM05D003206 ORTHO05D005207 2.1e-46 189.1 127 67.7
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 2.7e-46 188.7 127 69.3
CSS0015374 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 2.7e-46 188.7 127 70.9
Lj5A75T45 Lonicera japonica HOM05D003206 ORTHO05D005207 2.7e-46 188.7 142 64.1
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 3.5e-46 188.3 127 69.3
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 3.5e-46 188.3 127 69.3
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 3.5e-46 188.3 127 69.3
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 4.6e-46 188.0 127 70.9
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 6.1e-46 187.6 127 70.1
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 1.0e-45 186.8 127 68.5
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 1.0e-45 186.8 127 68.5
A07p45230 Brassica napus HOM05D003206 ORTHO05D005207 1.0e-45 186.8 127 68.5
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 1.0e-45 186.8 127 68.5
BraA07t32026Z Brassica rapa HOM05D003206 ORTHO05D005207 1.0e-45 186.8 127 68.5
Lsat_1_v5_gn_5_8920 Lactuca sativa HOM05D003206 ORTHO05D005207 1.0e-45 186.8 127 67.7
Medtr4g009920 Medicago truncatula HOM05D003206 ORTHO05D005207 1.0e-45 186.8 127 68.5
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 1.3e-45 186.4 127 67.7
C06p54070 Brassica napus HOM05D003206 ORTHO05D005207 1.3e-45 186.4 127 68.5
Ca_12518_v3 Cicer arietinum L. HOM05D003206 ORTHO05D005207 1.3e-45 186.4 127 69.3
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 1.3e-45 186.4 127 66.9
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 1.8e-45 186.0 127 68.5
TPR.G38649 Trifolium pratense HOM05D003206 ORTHO05D005207 1.8e-45 186.0 127 68.5
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 1.8e-45 186.0 127 68.5
AL2G41040 Arabidopsis lyrata HOM05D003206 ORTHO05D005207 2.3e-45 185.7 127 68.5
AT1G80460 Arabidopsis thaliana HOM05D003206 ORTHO05D005207 2.3e-45 185.7 127 68.5
BolC6t40420H Brassica oleracea HOM05D003206 ORTHO05D005207 2.3e-45 185.7 127 67.7
vmacro19016 Vaccinium macrocarpon HOM05D003206 ORTHO05D005207 2.3e-45 185.7 126 66.7
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 3.0e-45 185.3 127 69.3
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 5.1e-45 184.5 127 67.7
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 5.1e-45 184.5 127 69.3
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 5.1e-45 184.5 127 69.3
Sp5g35360 Schrenkiella parvula HOM05D003206 ORTHO05D005207 5.1e-45 184.5 127 67.7
TPR.G38684 Trifolium pratense HOM05D003206 ORTHO05D005207 5.1e-45 184.5 127 68.5
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 6.7e-45 184.1 127 66.9
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 6.7e-45 184.1 127 66.9
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 6.7e-45 184.1 127 66.9
CANSAT56G2846 Cannabis sativa HOM05D003206 ORTHO05D005207 6.7e-45 184.1 127 67.7
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 6.7e-45 184.1 127 67.7
TPR.G12167 Trifolium pratense HOM05D003206 ORTHO05D005207 6.7e-45 184.1 127 68.5
Aqoxy7G02449 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 8.7e-45 183.7 128 70.3
CARHR074790 Cardamine hirsuta HOM05D003206 ORTHO05D005207 8.7e-45 183.7 127 66.9
Thhalv10018399m.g Eutrema salsugineum HOM05D003206 ORTHO05D005207 1.1e-44 183.3 127 66.9
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 1.5e-44 183.0 127 66.1
QL05p032218 Quercus lobata HOM05D003206 ORTHO05D005207 1.5e-44 183.0 127 65.4
HPP92_026428 Vanilla planifolia HOM05D003206 ORTHO05D005207 1.5e-44 183.0 127 66.9
FAN09G0009 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.9e-44 182.6 127 67.7
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 2.5e-44 182.2 127 66.9
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 2.5e-44 182.2 127 65.4
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 2.5e-44 182.2 127 70.1
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 3.3e-44 181.8 127 69.3
FAN02G3805 Fragaria x ananassa HOM05D003206 ORTHO05D005207 5.7e-44 181.0 127 66.9
arahy.Tifrunner.gnm1.ann1.TT8CUF Arachis hypogaea HOM05D003206 ORTHO05D005207 1.6e-43 179.5 127 67.7
VMungo0331G1864 Vigna mungo HOM05D003206 ORTHO05D005207 1.6e-43 179.5 127 67.7
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 2.2e-43 179.1 127 66.1
FvH4_6g29340 Fragaria vesca HOM05D003206 ORTHO05D005207 3.7e-43 178.3 127 64.6
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 1.1e-42 176.8 126 66.7
BcaB05g25268 Brassica carinata HOM05D003206 ORTHO05D005207 2.4e-42 175.6 127 65.4
Lalb_Chr25g0279091 Lupinus albus HOM05D003206 ORTHO05D005207 2.4e-42 175.6 127 64.6
Lalb_Chr01g0012271 Lupinus albus HOM05D003206 ORTHO05D005207 6.9e-42 174.1 127 63.0
Duzib235G0619 Durio zibethinus HOM05D003206 ORTHO05D005207 2.0e-41 172.6 144 59.0
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 3.8e-40 168.3 127 63.8
arahy.Tifrunner.gnm1.ann1.ZMG720 Arachis hypogaea HOM05D003206 ORTHO05D005207 2.5e-39 165.6 157 55.4
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 2.5e-39 165.6 127 64.6
Ciclev10025756m.g Citrus clementina HOM05D003206 ORTHO05D005207 8.8e-37 157.1 106 68.9
Mapoly0004s0005 Marchantia polymorpha HOM05D003206 ORTHO05D005207 2.5e-36 155.6 127 59.1
Gohir.D06G120000 Gossypium hirsutum HOM05D003206 ORTHO05D005207 4.3e-36 154.8 127 62.2
Ciclev10020202m.g Citrus clementina HOM05D003206 ORTHO05D005207 1.1e-34 150.2 117 59.8
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 2.4e-34 149.1 127 56.7
CBR_g36912 Chara braunii HOM05D003206 ORTHO05D005207 3.1e-34 148.7 127 52.0
Actinidia01729 Actinidia chinensis HOM05D003206 ORTHO05D017170 7.7e-33 144.1 93 72.0
CBR_g30419 Chara braunii HOM05D003206 ORTHO05D005207 1.0e-32 143.7 127 51.2
MCO09G056 Micromonas commoda HOM05D003206 ORTHO05D005207 7.0e-26 120.9 127 45.7
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.2e-25 120.2 84 66.7
Cre04.g224150 Chlamydomonas reinhardtii HOM05D003206 ORTHO05D005207 1.3e-24 116.7 132 45.5
BcaC03g17489 Brassica carinata HOM05D003206 ORTHO05D024104 6.5e-24 114.4 122 49.2
Haze_26576 Corylus avellana HOM05D003206 ORTHO05D164003 1.5e-23 113.2 128 44.5
PRCOL_00002221 Prasinoderma coloniale HOM05D003206 ORTHO05D005207 3.0e-21 105.5 127 40.2
Aqoxy7G03605 Aquilegia oxysepala HOM05D003206 ORTHO05D017170 4.0e-21 105.1 68 72.1
A09p11980 Brassica napus HOM05D003206 ORTHO05D016781 5.2e-21 104.8 141 43.3
Cfa027331 Carpinus fangiana HOM05D003206 ORTHO05D122679 1.7e-19 99.8 126 42.1
Sc10g0006040 Simmondsia chinensis HOM05D003206 ORTHO05D005207 1.1e-18 97.1 59 76.3
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 3.1e-18 95.5 113 41.6
Cfa001939 Carpinus fangiana HOM05D003206 ORTHO05D005207 1.2e-17 93.6 59 69.5
Haze_26767 Corylus avellana HOM05D003206 ORTHO05D005207 1.6e-17 93.2 126 40.5
TAR626G0098 Trochodendron aralioides HOM05D003206 ORTHO05D005207 1.6e-17 93.2 60 70.0
Cfa003309 Carpinus fangiana HOM05D003206 ORTHO05D005207 3.5e-17 92.0 59 67.8
BcaC07g39914 Brassica carinata HOM05D003206 ORTHO05D005207 1.1e-15 87.0 99 49.5
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 7.2e-15 84.3 59 62.7
Zm00001eb393230 Zea mays HOM05D003206 ORTHO05D022459 1.5e-12 76.6 47 70.2
HPP92_015257 Vanilla planifolia HOM05D003206 ORTHO05D017170 2.6e-12 75.9 68 52.9
HPP92_009998 Vanilla planifolia HOM05D003206 ORTHO05D017170 7.5e-12 74.3 66 53.0
Lsat_1_v5_gn_8_93800 Lactuca sativa HOM05D003206 ORTHO05D024104 5.4e-10 68.2 44 68.2
CSS0014706 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D017170 5.9e-09 64.7 39 74.4
CSS0005656 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D017170 7.7e-09 64.3 63 54.0
CSS0004619 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D024104 1.2e-06 57.0 38 71.1
COL.COLO4_08784 Corchorus olitorius HOM05D000005 ORTHO05D000012 4.7e-06 55.1 32 75.0


User provided reference genes

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