Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 0.0e+00 1888.6 943 100.0
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 2.5e-290 1002.3 931 55.6
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 3.5e-284 981.9 945 55.0
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 6.2e-273 944.5 926 52.5
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 1.2e-271 940.3 940 52.2
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.3e-270 936.8 920 52.8
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 2.9e-270 935.6 933 52.5
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 5.1e-267 924.9 930 51.8
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 5.6e-266 921.4 926 51.7
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 1.1e-264 917.1 925 51.4
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 3.1e-264 915.6 944 51.1
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 3.1e-264 915.6 945 51.2
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 4.9e-262 908.3 930 51.8
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 6.5e-262 907.9 929 51.8
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.4e-261 906.7 928 51.4
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.4e-261 906.7 928 51.3
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-261 906.7 941 51.2
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 2.3e-259 899.4 937 51.0
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 3.0e-259 899.0 927 51.0
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.5e-258 896.0 935 51.0
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 1.6e-257 893.3 936 50.7
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 9.0e-256 887.5 934 50.3
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 1.2e-255 887.1 933 51.0
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 2.0e-255 886.3 948 51.4
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 2.6e-255 885.9 935 49.7
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 7.7e-255 884.4 928 50.5
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.3e-254 883.6 813 55.0
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 4.2e-253 878.6 938 49.8
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 1.8e-251 873.2 934 49.9
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.7e-249 866.7 942 50.4
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 1.7e-249 866.7 938 49.3
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 4.8e-249 865.1 933 49.5
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 2.4e-248 862.8 928 49.9
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 6.9e-248 861.3 945 48.8
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.5e-247 860.1 929 50.1
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.1e-245 854.0 938 48.9
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 5.5e-245 851.7 917 49.9
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 1.1e-242 844.0 928 49.2
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 5.7e-242 841.6 943 47.9
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 2.0e-239 833.2 939 49.1
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 7.7e-239 831.2 934 48.0
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 1.3e-238 830.5 931 47.9
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.1e-237 827.4 934 47.8
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 3.2e-237 825.9 934 47.8
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 1.6e-236 823.5 938 48.8
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 4.7e-236 822.0 932 48.3
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.8e-235 820.1 945 48.6
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 2.3e-235 819.7 926 48.9
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 3.9e-235 818.9 937 49.2
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 6.3e-233 811.6 931 47.3
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 3.8e-230 802.4 943 47.7
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 6.5e-230 801.6 1018 45.0
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 4.2e-229 798.9 933 46.6
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.2e-228 797.3 936 46.9
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 9.1e-224 781.2 730 55.1
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 3.8e-222 775.8 916 47.8
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 1.9e-221 773.5 920 46.6
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 2.5e-221 773.1 937 45.9
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 5.5e-221 771.9 864 48.5
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 3.6e-220 769.2 921 46.3
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 8.0e-220 768.1 928 45.9
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 3.0e-219 766.1 928 45.8
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 4.0e-219 765.8 927 45.8
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 2.2e-217 760.0 938 44.9
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 4.8e-217 758.8 928 45.2
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 3.1e-216 756.1 934 45.2
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 4.1e-216 755.7 679 57.9
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.1e-213 747.7 926 45.0
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 1.1e-213 747.7 929 44.6
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 4.2e-213 745.7 924 45.2
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.8e-211 740.3 927 44.8
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 4.0e-211 739.2 922 44.5
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 9.8e-210 734.6 937 43.9
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 1.4e-208 730.7 935 43.0
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.4e-208 729.9 930 44.2
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 7.0e-208 728.4 1172 38.1
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 7.0e-208 728.4 930 44.6
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 5.9e-207 725.3 928 44.0
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 7.8e-207 724.9 923 43.6
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-204 716.8 715 53.0
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 1.4e-203 714.1 765 49.4
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.6e-202 709.9 934 43.6
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 2.9e-201 706.4 962 43.1
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 3.0e-198 696.4 930 42.9
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 1.5e-197 694.1 929 43.1
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 6.8e-195 685.3 940 41.3
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 2.2e-193 680.2 1013 41.0
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 4.6e-191 672.5 747 48.1
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 6.2e-180 635.6 492 62.2
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 4.0e-179 632.9 722 47.2
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 8.7e-174 615.1 856 42.2
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 3.3e-173 613.2 926 39.6
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 9.6e-173 611.7 939 38.6
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.1e-168 598.2 679 47.9
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 8.7e-166 588.6 553 55.0
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-164 584.7 918 40.2
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 5.3e-163 579.3 655 48.4
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 6.9e-163 578.9 967 38.0
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 2.3e-158 563.9 944 38.7
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.1e-156 557.4 471 59.4
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-154 551.6 441 61.2
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 2.3e-142 510.8 941 36.7
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 2.2e-137 494.2 413 58.6
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 6.9e-131 472.6 931 34.6
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 5.0e-129 466.5 520 49.2
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 3.0e-118 430.6 477 50.1
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 1.3e-105 388.7 487 44.8
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 7.5e-101 372.9 851 31.8
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.3e-100 369.8 561 39.6
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 2.8e-95 354.4 393 51.1
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 2.9e-92 344.4 360 51.4
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 1.6e-90 338.6 330 54.2
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 5.9e-90 336.7 493 40.8
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.9e-88 331.6 222 70.7
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.9e-88 331.6 222 70.7
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 7.3e-88 329.7 299 57.5
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 1.0e-86 325.9 529 37.6
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 8.9e-86 322.8 255 61.2
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 4.4e-85 320.5 490 40.2
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.1e-75 286.6 432 38.7
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 4.6e-74 283.9 485 37.1
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 5.6e-72 276.9 282 52.8
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.4e-70 272.3 496 36.9
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 3.4e-69 267.7 322 46.9
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 3.4e-69 267.7 416 39.2
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 2.5e-64 251.5 507 32.0
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 3.4e-61 241.1 619 29.9
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.2e-55 220.3 464 31.7
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.5e-53 215.7 238 46.2
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 9.9e-53 213.0 390 35.4
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 2.9e-52 211.5 588 28.4
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 7.1e-51 206.8 248 44.8
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 7.9e-50 203.4 158 63.3
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.3e-49 201.8 248 44.4
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 1.9e-48 198.7 330 37.0
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.8e-39 167.5 186 44.6
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 5.3e-38 164.1 175 49.7
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 5.3e-38 164.1 175 49.7
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.1e-35 153.7 255 35.3
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.0e-34 150.6 102 67.6
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 4.2e-27 127.9 201 39.8
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.2e-26 126.3 181 43.1
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 3.3e-24 118.2 199 39.2
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 4.8e-23 114.4 176 39.2
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-22 112.8 176 38.6
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.8e-22 112.5 115 47.8
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.0e-21 109.0 228 31.6
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 6.5e-20 104.0 889 20.9
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 7.2e-19 100.5 78 67.9
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-18 99.0 289 27.3
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 2.7e-18 98.6 76 60.5
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 5.7e-16 90.9 142 36.6
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.8e-14 85.9 75 56.0
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 5.0e-12 77.8 119 34.5
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.9e-09 68.2 45 71.1
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 8.8e-09 67.0 75 44.0
CDE09G0126 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 2.4e-06 58.9 54 55.6
C06p19910 Brassica napus HOM05D016195 ORTHO05D033444 3.1e-06 58.5 50 46.0
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 9.1e-06 57.0 159 29.6


User provided reference genes

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