Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 5.7e-104 380.9 194 100.0
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 7.5e-72 274.2 186 74.2
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 7.5e-72 274.2 186 74.2
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 4.8e-71 271.6 188 72.3
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.4e-70 270.0 188 71.8
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 1.0e-68 263.8 187 69.5
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 1.0e-68 263.8 187 69.5
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 1.3e-68 263.5 187 69.5
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 8.5e-68 260.8 187 70.1
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 1.5e-67 260.0 187 70.1
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.5e-67 260.0 187 70.1
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.5e-67 260.0 187 70.1
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.9e-67 259.6 187 70.6
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.9e-67 259.6 191 70.2
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 5.5e-67 258.1 187 70.1
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 2.7e-66 255.8 187 68.4
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 4.7e-66 255.0 186 68.3
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.4e-65 253.4 176 71.0
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 3.0e-65 252.3 178 69.7
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 3.0e-65 252.3 187 67.9
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 3.0e-65 252.3 187 67.9
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 3.0e-65 252.3 187 68.4
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 3.0e-65 252.3 187 66.3
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 5.2e-65 251.5 187 66.8
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 5.2e-65 251.5 176 69.9
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 1.2e-64 250.4 205 64.9
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 2.6e-64 249.2 187 67.4
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 3.4e-64 248.8 202 64.4
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 3.4e-64 248.8 178 70.2
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 4.4e-64 248.4 189 67.2
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 7.5e-64 247.7 187 65.8
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.3e-63 246.9 178 69.1
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 1.3e-63 246.9 187 66.8
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 1.7e-63 246.5 188 67.6
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 2.8e-63 245.7 188 64.9
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 3.7e-63 245.4 188 67.0
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 4.8e-63 245.0 187 65.8
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 6.3e-63 244.6 175 69.1
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 6.3e-63 244.6 190 67.4
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 1.8e-62 243.0 193 62.2
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 2.4e-62 242.7 151 78.8
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 3.1e-62 242.3 189 64.0
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 4.1e-62 241.9 188 63.8
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 5.4e-62 241.5 188 66.0
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 5.4e-62 241.5 186 65.1
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 5.4e-62 241.5 187 66.3
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 7.0e-62 241.1 187 64.2
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.2e-61 240.4 175 69.1
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.6e-61 240.0 188 61.7
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.6e-61 240.0 187 66.3
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.6e-61 240.0 187 66.3
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 3.5e-61 238.8 187 64.2
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 3.5e-61 238.8 176 68.8
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 3.5e-61 238.8 188 63.3
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 3.5e-61 238.8 184 64.7
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 5.9e-61 238.0 189 63.5
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 5.9e-61 238.0 189 63.0
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.0e-60 237.3 187 65.2
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.3e-60 236.9 187 64.7
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 1.3e-60 236.9 187 63.6
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 3.8e-60 235.3 175 67.4
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 3.8e-60 235.3 183 66.7
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 5.0e-60 235.0 182 65.9
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 6.5e-60 234.6 174 66.1
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.1e-59 233.8 187 64.7
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.5e-59 233.4 183 65.6
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.5e-59 232.6 197 61.9
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 2.5e-59 232.6 184 62.5
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 3.2e-59 232.3 184 64.1
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 3.2e-59 232.3 176 65.3
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 3.2e-59 232.3 188 61.7
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 5.5e-59 231.5 204 58.8
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 9.4e-59 230.7 187 61.5
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 1.2e-58 230.3 175 64.0
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 1.2e-58 230.3 175 65.1
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 2.1e-58 229.6 187 62.6
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.6e-58 228.8 189 63.0
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 3.6e-58 228.8 188 63.3
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 4.7e-58 228.4 183 62.3
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 4.7e-58 228.4 187 62.6
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 6.1e-58 228.0 187 62.0
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 6.1e-58 228.0 179 64.2
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 6.1e-58 228.0 184 63.0
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 1.0e-57 227.3 175 65.7
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.4e-57 226.9 176 63.6
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 6.8e-57 224.6 189 62.4
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.2e-56 223.8 198 59.1
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 1.5e-56 223.4 186 60.8
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 2.0e-56 223.0 198 58.6
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 3.4e-56 222.2 189 62.4
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.7e-56 221.5 187 62.0
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 1.3e-55 220.3 184 61.4
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 3.1e-54 215.7 182 59.3
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 4.1e-54 215.3 158 69.6
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 4.1e-54 215.3 184 58.7
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 1.6e-53 213.4 184 59.8
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 5.9e-53 211.5 275 46.5
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.4e-49 200.3 163 64.4
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 1.7e-47 193.4 187 51.3
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 4.9e-47 191.8 155 63.2
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 9.2e-46 187.6 182 53.8
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 3.0e-44 182.6 182 57.1
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 3.9e-44 182.2 193 48.7
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 8.6e-44 181.0 176 52.8
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 5.6e-43 178.3 193 46.6
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 7.3e-43 177.9 193 47.2
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 4.7e-42 175.3 193 46.6
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 6.2e-42 174.9 175 51.4
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 8.0e-42 174.5 205 49.3
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 4.0e-41 172.2 175 51.4
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 1.5e-40 170.2 175 51.4
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 2.0e-40 169.9 193 46.1
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 5.8e-40 168.3 148 57.4
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 2.2e-39 166.4 176 51.1
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 2.2e-39 166.4 176 51.1
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 4.9e-39 165.2 176 50.6
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 6.4e-39 164.9 148 56.1
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 1.1e-38 164.1 142 57.7
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 1.1e-38 164.1 142 57.7
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 3.2e-38 162.5 179 53.1
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 3.0e-36 156.0 148 54.7
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 7.3e-35 151.4 106 71.7
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 7.5e-32 141.4 155 52.9
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 4.9e-31 138.7 148 51.4
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.2e-26 124.0 112 61.6
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 5.4e-22 108.6 84 67.9
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 1.2e-21 107.5 155 41.9
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 2.7e-21 106.3 155 41.9
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 2.7e-21 106.3 77 61.0
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.0e-20 102.8 87 60.9
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.2e-18 97.4 80 66.2
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 2.1e-18 96.7 74 62.2
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.1e-17 92.8 81 60.5
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.0e-17 92.4 75 62.7
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 1.2e-16 90.9 84 59.5
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.2e-16 90.9 75 61.3
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 5.8e-16 88.6 118 41.5
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 9.9e-16 87.8 155 34.2
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 1.1e-14 84.3 59 69.5
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 1.6e-13 80.5 97 48.5
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 4.8e-10 68.9 90 46.7
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.7e-07 60.5 65 53.8


User provided reference genes

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