Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 2.9e-166 588.6 315 100.0
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 4.6e-71 272.3 322 54.0
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 7.8e-71 271.6 315 53.3
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.3e-70 270.8 320 54.1
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.7e-70 270.4 315 52.4
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 3.0e-70 269.6 321 53.3
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 3.3e-69 266.2 315 52.1
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 5.6e-69 265.4 339 50.7
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 7.3e-69 265.0 316 54.1
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 9.6e-69 264.6 316 52.2
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 9.6e-69 264.6 316 51.3
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 1.3e-68 264.2 317 54.9
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 4.8e-68 262.3 320 53.4
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 4.8e-68 262.3 321 51.4
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 1.1e-67 261.2 332 51.2
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 1.4e-67 260.8 320 50.6
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.8e-67 260.4 319 53.0
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 1.2e-66 257.7 328 50.9
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 3.8e-65 252.7 320 53.1
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 1.1e-64 251.1 314 51.0
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 1.4e-64 250.8 314 49.4
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 1.4e-64 250.8 314 51.3
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 1.9e-64 250.4 316 51.9
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 2.4e-64 250.0 318 50.6
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.2e-63 247.7 319 52.0
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 1.2e-63 247.7 318 51.6
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 1.6e-63 247.3 319 51.1
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.6e-63 247.3 322 51.6
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 3.5e-63 246.1 209 67.0
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 3.5e-63 246.1 315 51.4
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 4.6e-63 245.7 321 49.8
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 4.6e-63 245.7 327 50.8
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 6.0e-63 245.4 220 62.3
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 7.9e-63 245.0 316 50.0
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 7.9e-63 245.0 323 51.4
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 1.3e-62 244.2 359 45.7
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 2.3e-62 243.4 316 50.6
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 1.1e-61 241.1 313 50.8
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 1.9e-61 240.4 314 51.3
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 2.5e-61 240.0 319 49.5
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 5.6e-61 238.8 321 49.8
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 5.6e-61 238.8 321 49.8
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 5.6e-61 238.8 319 49.5
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 9.6e-61 238.0 320 50.9
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 9.6e-61 238.0 346 48.8
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 3.7e-60 236.1 352 45.7
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 3.7e-60 236.1 336 47.9
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 4.8e-60 235.7 318 50.3
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 6.2e-60 235.3 325 48.0
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 8.1e-60 235.0 326 50.0
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 1.4e-59 234.2 313 50.2
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 1.8e-59 233.8 319 48.3
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 2.4e-59 233.4 328 48.5
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.4e-59 233.4 314 48.1
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 3.1e-59 233.0 322 48.1
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 5.3e-59 232.3 318 49.1
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 5.3e-59 232.3 320 50.0
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 6.9e-59 231.9 315 49.8
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 9.0e-59 231.5 323 48.0
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.2e-58 231.1 323 48.0
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 1.5e-58 230.7 317 48.3
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 2.6e-58 229.9 323 46.7
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 3.4e-58 229.6 328 48.8
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 4.5e-58 229.2 323 47.7
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 4.5e-58 229.2 321 48.3
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 9.9e-58 228.0 192 67.7
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 1.3e-57 227.6 323 48.0
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 1.3e-57 227.6 170 75.3
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 2.2e-57 226.9 321 49.5
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.9e-57 226.5 325 48.6
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 1.1e-56 224.6 333 45.9
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 1.4e-56 224.2 331 47.4
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 7.1e-56 221.9 321 48.3
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 9.3e-56 221.5 318 47.2
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 1.6e-55 220.7 339 47.8
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 3.5e-55 219.5 324 46.0
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 3.5e-55 219.5 337 44.5
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 3.5e-55 219.5 322 47.2
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 4.6e-55 219.2 316 45.9
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 4.6e-55 219.2 322 46.9
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 4.6e-55 219.2 322 46.9
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 1.0e-54 218.0 323 46.1
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 1.3e-54 217.6 324 46.6
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 1.3e-54 217.6 324 46.6
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.0e-54 216.5 318 45.9
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 6.7e-54 215.3 326 46.0
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 6.7e-54 215.3 324 46.0
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 6.7e-54 215.3 267 52.1
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 1.1e-53 214.5 321 45.5
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 1.1e-53 214.5 267 52.4
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 3.3e-53 213.0 322 45.3
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 1.3e-52 211.1 313 46.0
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 1.6e-52 210.7 334 45.8
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 3.7e-52 209.5 308 46.4
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 2.4e-51 206.8 320 45.0
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 9.0e-51 204.9 313 42.2
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 1.2e-50 204.5 336 44.9
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 1.5e-50 204.1 285 47.7
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 2.0e-50 203.8 316 45.6
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 2.0e-50 203.8 329 45.6
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 2.6e-50 203.4 313 43.1
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 4.9e-49 199.1 331 43.5
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 8.4e-49 198.4 315 44.8
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 1.4e-48 197.6 192 58.9
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 1.4e-48 197.6 192 58.9
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 7.1e-48 195.3 208 51.9
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 7.1e-48 195.3 207 55.1
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 7.1e-48 195.3 207 55.1
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 1.2e-47 194.5 267 47.9
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 4.6e-47 192.6 274 47.8
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 6.0e-47 192.2 314 41.1
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 1.0e-46 191.4 322 42.9
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 6.7e-46 188.7 209 54.1
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 8.2e-44 181.8 321 43.3
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 4.1e-43 179.5 315 42.5
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 1.2e-42 177.9 257 47.5
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 5.9e-42 175.6 199 50.8
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 7.6e-42 175.3 266 44.7
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 1.0e-41 174.9 240 48.8
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 3.8e-41 172.9 214 52.3
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 2.7e-39 166.8 267 46.1
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 6.7e-38 162.2 224 46.4
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 5.7e-37 159.1 270 44.1
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 4.1e-35 152.9 246 46.3
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.3e-33 147.9 170 52.9
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 7.2e-32 142.1 337 36.2
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 9.4e-32 141.7 237 43.0
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 3.6e-31 139.8 214 46.3
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 3.6e-31 139.8 232 46.6
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 5.1e-30 136.0 210 46.2
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 7.4e-29 132.1 217 43.3
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.0e-25 121.7 196 44.9
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 3.8e-25 119.8 314 35.0
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 2.5e-24 117.1 189 43.9
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 3.6e-23 113.2 100 59.0
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 4.7e-23 112.8 318 33.0
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 3.0e-22 110.2 108 55.6
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 5.2e-22 109.4 275 35.3
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.3e-21 106.7 107 53.3
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 1.2e-18 98.2 99 53.5
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 2.6e-18 97.1 116 51.7
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 3.5e-18 96.7 87 55.2
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 2.2e-17 94.0 71 70.4
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 5.5e-16 89.4 151 43.7
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 4.8e-12 76.3 114 43.0
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 3.1e-11 73.6 53 69.8
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 5.9e-10 69.3 95 44.2
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 7.7e-10 68.9 315 29.5
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 1.1e-08 65.1 57 56.1


User provided reference genes

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