Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 8.2e-44 179.9 83 100.0
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 1.8e-35 152.1 83 83.1
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 2.6e-34 148.3 83 78.3
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 2.6e-34 148.3 83 79.5
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 5.9e-34 147.1 83 77.1
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 7.7e-34 146.7 83 77.1
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.0e-33 146.4 83 80.7
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.7e-33 145.6 83 77.1
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 1.7e-33 145.6 83 79.5
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 2.2e-33 145.2 79 78.5
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 2.2e-33 145.2 83 77.1
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 2.2e-33 145.2 83 75.9
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 2.2e-33 145.2 83 75.9
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 2.9e-33 144.8 85 76.5
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 3.8e-33 144.4 83 77.1
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 3.8e-33 144.4 83 74.7
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 3.8e-33 144.4 83 75.9
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 5.0e-33 144.1 83 75.9
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 5.0e-33 144.1 83 75.9
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 5.0e-33 144.1 83 77.1
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 5.0e-33 144.1 83 74.7
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 6.5e-33 143.7 82 74.4
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 8.5e-33 143.3 83 74.7
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 8.5e-33 143.3 83 74.7
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 8.5e-33 143.3 83 75.9
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 1.1e-32 142.9 86 74.4
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 1.1e-32 142.9 86 74.4
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.4e-32 142.5 82 72.0
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.4e-32 142.5 83 73.5
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 1.4e-32 142.5 86 75.6
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 1.4e-32 142.5 83 74.7
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 1.9e-32 142.1 85 74.1
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 1.9e-32 142.1 83 74.7
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 2.5e-32 141.7 83 78.3
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 2.5e-32 141.7 86 75.6
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 2.5e-32 141.7 84 76.2
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 3.2e-32 141.4 86 73.3
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 3.2e-32 141.4 83 73.5
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 4.2e-32 141.0 82 72.0
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 5.5e-32 140.6 83 75.9
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 5.5e-32 140.6 85 74.1
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 7.2e-32 140.2 87 74.7
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 7.2e-32 140.2 83 73.5
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 9.4e-32 139.8 87 72.4
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 9.4e-32 139.8 87 78.2
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 1.2e-31 139.4 85 72.9
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 1.2e-31 139.4 86 72.1
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 1.2e-31 139.4 86 72.1
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 1.2e-31 139.4 83 73.5
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 1.6e-31 139.0 87 73.6
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 1.6e-31 139.0 83 73.5
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 1.6e-31 139.0 83 74.7
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 2.1e-31 138.7 83 75.9
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 2.1e-31 138.7 87 73.6
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 2.1e-31 138.7 86 73.3
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 2.7e-31 138.3 87 72.4
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 2.7e-31 138.3 80 76.2
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 2.7e-31 138.3 83 74.7
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 3.6e-31 137.9 79 75.9
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 3.6e-31 137.9 84 76.2
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 6.1e-31 137.1 84 72.6
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 6.1e-31 137.1 86 72.1
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 7.9e-31 136.7 83 71.1
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 7.9e-31 136.7 83 74.7
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 7.9e-31 136.7 83 75.9
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 1.0e-30 136.3 87 72.4
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 1.0e-30 136.3 83 74.7
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 1.0e-30 136.3 83 75.9
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 1.4e-30 136.0 81 70.4
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 1.4e-30 136.0 87 70.1
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.8e-30 135.6 83 73.5
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.8e-30 135.6 83 73.5
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 1.8e-30 135.6 82 72.0
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 2.3e-30 135.2 80 72.5
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 2.3e-30 135.2 80 72.5
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 2.3e-30 135.2 80 72.5
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 2.3e-30 135.2 80 72.5
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 3.9e-30 134.4 82 72.0
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 3.9e-30 134.4 83 74.7
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 3.9e-30 134.4 83 73.5
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 3.9e-30 134.4 84 73.8
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 5.1e-30 134.0 80 72.5
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 6.7e-30 133.7 84 73.8
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 6.7e-30 133.7 84 72.6
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 6.7e-30 133.7 81 74.1
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 6.7e-30 133.7 83 71.1
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 8.8e-30 133.3 64 89.1
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 8.8e-30 133.3 64 89.1
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 8.8e-30 133.3 83 72.3
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 8.8e-30 133.3 86 69.8
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 8.8e-30 133.3 80 72.5
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 8.8e-30 133.3 83 75.9
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 1.1e-29 132.9 82 73.2
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 1.1e-29 132.9 80 71.2
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 1.1e-29 132.9 83 71.1
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 1.1e-29 132.9 84 75.0
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 1.1e-29 132.9 84 75.0
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 1.5e-29 132.5 80 71.2
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 2.0e-29 132.1 78 74.4
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 2.0e-29 132.1 75 77.3
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 2.0e-29 132.1 82 72.0
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 2.0e-29 132.1 82 72.0
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 2.0e-29 132.1 78 75.6
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 2.0e-29 132.1 87 71.3
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 2.6e-29 131.7 67 83.6
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 2.6e-29 131.7 67 83.6
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 2.6e-29 131.7 80 68.8
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 3.3e-29 131.3 83 72.3
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 4.4e-29 131.0 75 77.3
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 7.4e-29 130.2 80 68.8
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 7.4e-29 130.2 83 67.5
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 7.4e-29 130.2 83 67.5
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 9.7e-29 129.8 64 84.4
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 9.7e-29 129.8 80 73.8
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 1.3e-28 129.4 82 67.1
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 1.3e-28 129.4 82 69.5
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 1.7e-28 129.0 62 87.1
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.7e-28 129.0 73 75.3
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 3.7e-28 127.9 84 70.2
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 3.7e-28 127.9 63 84.1
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 4.8e-28 127.5 83 68.7
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 6.3e-28 127.1 89 65.2
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 6.3e-28 127.1 82 68.3
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 1.4e-27 125.9 84 69.0
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 1.8e-27 125.6 86 69.8
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 2.4e-27 125.2 74 73.0
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 3.1e-27 124.8 64 81.2
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 4.1e-27 124.4 78 66.7
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 2.2e-25 118.6 69 72.5
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 8.5e-25 116.7 62 79.0
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 4.2e-24 114.4 54 88.9
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 5.5e-24 114.0 58 82.8
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 2.7e-23 111.7 68 70.6
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 2.7e-23 111.7 52 88.5
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 4.0e-22 107.8 51 86.3
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 4.0e-22 107.8 54 81.5
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 3.7e-20 101.3 61 70.5
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 4.8e-20 100.9 56 73.2
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 4.1e-19 97.8 63 57.1
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 3.6e-15 84.7 59 57.6
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 1.0e-14 83.2 45 73.3


User provided reference genes

Program Settings