Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 3.4e-98 361.7 184 100.0
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 7.6e-50 201.1 172 57.6
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 5.6e-45 184.9 164 57.9
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 7.4e-45 184.5 174 57.5
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.1e-43 180.6 174 52.9
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 9.0e-43 177.6 163 57.1
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 2.0e-42 176.4 174 52.9
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 3.4e-42 175.6 176 52.3
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.2e-41 172.9 173 50.9
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 2.9e-41 172.6 166 53.0
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 8.4e-41 171.0 167 55.1
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 1.1e-40 170.6 169 52.7
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.4e-40 170.2 174 50.0
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 1.4e-40 170.2 172 52.3
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 2.5e-40 169.5 171 52.0
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 4.2e-40 168.7 171 50.9
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 1.6e-39 166.8 164 51.8
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.6e-39 166.8 175 50.3
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 3.5e-39 165.6 164 51.8
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 6.0e-39 164.9 168 49.4
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 6.0e-39 164.9 165 52.7
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 7.9e-39 164.5 175 50.9
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 7.9e-39 164.5 172 49.4
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.0e-38 164.1 164 51.8
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 2.3e-38 162.9 172 50.0
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.9e-38 162.2 165 52.1
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 5.1e-38 161.8 135 56.3
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 5.1e-38 161.8 170 52.4
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 5.1e-38 161.8 170 51.8
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 6.7e-38 161.4 170 52.9
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 6.7e-38 161.4 161 50.9
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 6.7e-38 161.4 166 50.6
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 8.7e-38 161.0 165 52.1
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.1e-37 160.6 162 49.4
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.1e-37 160.6 162 49.4
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.1e-37 160.6 164 50.6
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.5e-37 160.2 176 47.7
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 2.5e-37 159.5 166 49.4
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 2.5e-37 159.5 164 50.6
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 3.3e-37 159.1 151 54.3
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 3.3e-37 159.1 151 54.3
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 4.3e-37 158.7 170 50.6
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 5.7e-37 158.3 164 49.4
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 7.4e-37 157.9 172 48.3
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 9.6e-37 157.5 170 48.8
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 1.6e-36 156.8 164 47.6
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 2.1e-36 156.4 164 48.8
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 2.8e-36 156.0 174 47.7
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 3.7e-36 155.6 164 48.8
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 3.7e-36 155.6 164 48.8
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 3.7e-36 155.6 144 55.6
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 3.7e-36 155.6 165 49.1
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 4.8e-36 155.2 164 48.2
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 4.8e-36 155.2 175 44.0
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 6.2e-36 154.8 162 46.9
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 8.2e-36 154.5 164 47.0
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.1e-35 154.1 170 50.6
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 1.4e-35 153.7 160 52.5
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.8e-35 153.3 164 46.3
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 3.1e-35 152.5 173 49.7
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 3.1e-35 152.5 173 48.6
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 3.1e-35 152.5 164 46.3
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 5.3e-35 151.8 165 51.5
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 5.3e-35 151.8 168 47.6
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 5.3e-35 151.8 168 47.6
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 6.9e-35 151.4 164 48.2
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 6.9e-35 151.4 166 47.0
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.6e-34 149.4 167 48.5
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 2.6e-34 149.4 164 50.0
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 2.6e-34 149.4 164 46.3
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 3.4e-34 149.1 164 47.6
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 4.5e-34 148.7 173 46.2
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 5.8e-34 148.3 167 47.3
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 5.8e-34 148.3 152 48.0
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 7.6e-34 147.9 164 47.6
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.0e-33 147.5 172 48.8
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 2.2e-33 146.4 147 51.7
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.9e-32 143.3 202 41.6
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 3.2e-32 142.5 189 42.3
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 3.2e-32 142.5 164 46.3
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 4.2e-32 142.1 152 52.0
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 4.2e-32 142.1 168 48.8
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 4.2e-32 142.1 157 49.0
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 5.5e-32 141.7 182 44.5
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 7.2e-32 141.4 165 46.1
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 7.2e-32 141.4 173 46.2
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.6e-31 140.2 160 50.0
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.1e-31 139.8 131 53.4
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 2.7e-31 139.4 164 43.9
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 4.6e-31 138.7 142 52.1
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 7.9e-31 137.9 167 46.7
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.3e-30 137.1 142 48.6
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 3.9e-30 135.6 207 42.0
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 3.9e-30 135.6 131 51.9
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 3.9e-30 135.6 148 49.3
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 8.7e-30 134.4 161 49.7
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 8.7e-30 134.4 176 45.5
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 1.9e-29 133.3 146 49.3
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 2.5e-29 132.9 172 41.9
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 5.7e-29 131.7 166 42.8
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 5.7e-29 131.7 166 42.8
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 7.4e-29 131.3 146 47.3
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 7.4e-29 131.3 215 40.5
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 7.4e-29 131.3 169 45.0
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 9.7e-29 131.0 129 55.0
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.3e-28 130.6 214 39.3
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.6e-28 130.2 160 47.5
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 3.7e-28 129.0 146 46.6
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 4.8e-28 128.6 164 44.5
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 6.3e-28 128.3 147 47.6
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.8e-27 126.7 150 49.3
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 1.8e-27 126.7 179 45.3
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 3.1e-27 125.9 139 49.6
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 3.1e-27 125.9 170 42.9
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 9.0e-27 124.4 164 43.9
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 9.0e-27 124.4 145 48.3
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 9.0e-27 124.4 155 45.2
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 1.7e-25 120.2 132 50.8
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 3.8e-25 119.0 155 45.8
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 9.4e-24 114.4 112 50.9
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 2.1e-23 113.2 127 49.6
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 6.1e-23 111.7 135 47.4
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.5e-21 106.3 142 43.0
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 7.4e-21 104.8 165 36.4
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.8e-20 102.8 142 41.5
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 3.7e-20 102.4 107 48.6
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 4.8e-20 102.1 86 52.3
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 6.3e-20 101.7 166 36.1
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 2.4e-19 99.8 163 39.3
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 1.3e-17 94.0 141 41.1
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 2.9e-17 92.8 86 48.8
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 3.8e-17 92.4 86 47.7
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 3.8e-17 92.4 78 48.7
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 6.5e-17 91.7 174 35.1
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 8.5e-17 91.3 164 35.4
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 1.9e-16 90.1 137 43.1
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 5.5e-16 88.6 173 36.4
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 9.4e-16 87.8 90 45.6
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 2.0e-13 80.1 75 58.7
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 2.2e-12 76.6 80 60.0
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.7e-12 75.9 85 50.6
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 1.4e-11 73.9 80 55.0
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 3.1e-11 72.8 112 42.0
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 9.1e-11 71.2 84 48.8
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 2.0e-10 70.1 89 49.4
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 7.7e-10 68.2 84 46.4
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.0e-09 67.8 110 42.7
Cre09.g387504 Chlamydomonas reinhardtii HOM05D004607 ORTHO05D005836 2.1e-07 60.1 171 29.2
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 1.0e-06 57.8 55 56.4
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 1.8e-06 57.0 157 31.2
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 2.3e-06 56.6 68 52.9
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.0e-06 55.8 51 62.7
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 4.0e-06 55.8 67 53.7


User provided reference genes

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