Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 9.4e-231 803.1 395 100.0
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 2.1e-169 599.4 374 76.2
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 9.6e-167 590.5 392 72.7
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 1.2e-166 590.1 377 72.7
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 6.2e-166 587.8 375 75.2
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 8.1e-166 587.4 375 73.1
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 2.0e-164 582.8 392 71.7
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.3e-163 580.1 392 71.7
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.3e-163 580.1 392 71.7
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 1.3e-163 580.1 378 73.0
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 2.2e-163 579.3 375 72.8
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 2.2e-163 579.3 375 73.1
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 4.9e-163 578.2 374 73.5
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 1.1e-162 577.0 392 71.7
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.4e-162 576.6 376 72.9
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 1.9e-162 576.2 375 71.2
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 2.4e-162 575.9 375 71.2
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 7.1e-162 574.3 375 72.3
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 1.6e-161 573.2 375 70.9
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 1.6e-161 573.2 375 72.0
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 2.1e-161 572.8 375 71.7
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 2.7e-161 572.4 375 70.4
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 2.7e-161 572.4 375 72.3
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 6.0e-161 571.2 375 73.1
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 1.7e-160 569.7 375 72.0
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 1.7e-160 569.7 392 70.4
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.3e-160 569.3 375 71.5
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 2.3e-160 569.3 375 70.7
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 3.0e-160 568.9 375 72.5
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 8.7e-160 567.4 375 70.9
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 8.7e-160 567.4 374 70.9
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 1.9e-159 566.2 375 70.9
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 1.9e-159 566.2 375 68.5
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 1.9e-159 566.2 375 71.2
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 2.5e-159 565.8 375 68.5
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 2.5e-159 565.8 375 71.5
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 4.3e-159 565.1 379 70.7
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 7.3e-159 564.3 392 69.4
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 1.3e-158 563.5 375 69.6
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 2.1e-158 562.8 375 70.7
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.8e-158 562.4 375 71.7
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 3.6e-158 562.0 392 69.4
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.8e-157 559.7 375 70.4
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 3.1e-157 558.9 375 69.1
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 4.0e-157 558.5 375 70.9
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 4.0e-157 558.5 375 70.7
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 5.3e-157 558.1 375 70.4
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 6.9e-157 557.8 375 69.6
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 9.0e-157 557.4 375 69.3
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 1.2e-156 557.0 392 68.9
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 1.2e-156 557.0 375 69.9
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 1.5e-156 556.6 375 70.7
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 2.6e-156 555.8 375 69.6
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 2.6e-156 555.8 392 68.4
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 2.6e-156 555.8 379 70.4
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 3.4e-156 555.4 375 70.1
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 1.3e-155 553.5 375 68.0
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 1.3e-155 553.5 375 71.2
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 1.7e-155 553.1 375 69.3
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 1.7e-155 553.1 375 69.3
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.9e-155 552.4 376 70.7
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 3.8e-155 552.0 392 68.4
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 8.4e-155 550.8 375 68.8
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 1.1e-154 550.4 375 70.1
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 2.4e-154 549.3 393 67.9
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 4.2e-154 548.5 374 70.1
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 9.3e-154 547.4 374 69.5
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 1.2e-153 547.0 374 69.3
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 1.2e-153 547.0 375 69.3
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 1.2e-153 547.0 375 68.8
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 2.7e-153 545.8 375 69.6
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 3.5e-153 545.4 375 67.7
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 4.6e-153 545.0 374 69.5
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 2.3e-152 542.7 348 72.7
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.3e-152 542.7 385 67.3
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 2.3e-152 542.7 375 69.3
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 2.3e-152 542.7 374 69.3
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 2.3e-152 542.7 390 66.4
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 6.7e-152 541.2 385 67.3
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 8.7e-152 540.8 375 69.6
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 3.3e-151 538.9 375 69.6
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 3.3e-151 538.9 375 69.6
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 5.6e-151 538.1 375 69.3
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 9.6e-151 537.3 375 69.1
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 9.6e-151 537.3 375 67.7
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 1.1e-149 533.9 448 60.5
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.4e-149 533.5 375 68.5
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 1.8e-149 533.1 381 66.9
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.2e-148 530.4 375 67.7
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 3.4e-148 528.9 375 66.1
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 1.4e-146 523.5 374 67.6
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.9e-146 523.1 395 66.6
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 5.1e-144 515.0 385 65.7
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 5.6e-143 511.5 370 68.4
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 7.4e-143 511.1 363 66.9
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 5.3e-141 505.0 377 63.9
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 1.7e-139 500.0 375 64.0
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 9.3e-138 494.2 375 61.3
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 4.6e-137 491.9 375 64.0
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.3e-136 489.6 402 57.2
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 1.5e-135 486.9 433 58.7
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 1.5e-132 476.9 428 57.2
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 3.8e-131 472.2 319 72.1
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 3.0e-128 462.6 384 60.4
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 2.5e-127 459.5 402 60.2
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 9.7e-127 457.6 319 70.5
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 3.1e-125 452.6 375 60.3
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 5.3e-125 451.8 382 57.1
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 3.0e-120 436.0 364 58.0
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 6.7e-120 434.9 283 71.4
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 8.2e-118 427.9 283 70.0
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.8e-117 426.8 283 70.3
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 3.6e-113 412.5 305 66.2
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 2.3e-112 409.8 245 79.2
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 3.1e-101 372.9 251 70.1
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 4.5e-92 342.4 366 45.6
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 4.1e-85 319.3 391 43.5
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 1.5e-82 310.8 253 62.1
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 1.0e-80 304.7 383 41.8
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 2.9e-78 296.6 176 76.7
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 4.1e-77 292.7 178 75.3
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.1e-69 268.1 198 64.6
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 1.3e-62 244.6 198 63.6
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 6.6e-51 205.7 169 59.8
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.4e-48 198.0 127 74.8
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 1.2e-44 184.9 185 50.8
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 1.9e-42 177.6 380 30.5
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 5.6e-42 176.0 126 70.6
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.5e-39 166.4 132 62.9
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 7.6e-39 165.6 141 58.9
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 1.9e-37 161.0 152 54.6
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 1.0e-35 155.2 191 45.0
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 3.9e-35 153.3 108 62.0
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 5.6e-34 149.4 225 39.6
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 2.0e-31 141.0 75 81.3
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 9.9e-31 138.7 145 50.3
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 3.2e-29 133.7 96 64.6
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 3.5e-28 130.2 86 67.4
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 1.4e-24 118.2 125 52.8
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 3.4e-23 113.6 131 48.9
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 4.5e-23 113.2 126 50.0
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 1.3e-22 111.7 98 61.2
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 7.4e-18 95.9 93 49.5
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 1.7e-14 84.7 66 62.1
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 3.6e-12 77.0 64 62.5
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 5.1e-11 73.2 61 63.9
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 5.1e-11 73.2 52 65.4
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 5.7e-10 69.7 71 49.3
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 4.8e-09 66.6 51 62.7


User provided reference genes

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