Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 1.2e-214 749.6 383 100.0
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 3.0e-165 585.5 373 77.5
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 5.6e-164 581.3 376 77.9
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 7.3e-164 580.9 378 77.8
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 8.1e-163 577.4 377 76.4
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 3.1e-162 575.5 377 76.9
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 2.6e-161 572.4 378 75.7
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 9.9e-161 570.5 378 74.1
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 1.7e-160 569.7 378 74.6
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 1.7e-160 569.7 378 74.6
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 2.2e-160 569.3 377 75.6
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 3.8e-160 568.5 372 75.8
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 4.9e-160 568.2 372 75.0
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 4.9e-160 568.2 378 75.1
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 4.9e-160 568.2 375 74.9
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 8.4e-160 567.4 373 75.3
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 1.9e-159 566.2 378 74.3
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 3.2e-159 565.5 373 74.8
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 4.2e-159 565.1 373 74.5
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 4.2e-159 565.1 378 74.9
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 5.4e-159 564.7 378 74.1
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 1.2e-158 563.5 373 75.6
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 2.1e-158 562.8 372 74.7
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 2.1e-158 562.8 375 74.1
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 7.9e-158 560.8 376 74.2
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.8e-157 559.7 377 74.0
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 8.7e-157 557.4 373 75.1
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 1.1e-156 557.0 372 74.5
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 5.6e-156 554.7 379 72.6
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 1.3e-155 553.5 373 73.2
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 2.1e-155 552.7 373 73.5
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 8.1e-155 550.8 391 71.4
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 8.1e-155 550.8 396 71.0
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 8.1e-155 550.8 376 74.5
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.4e-154 550.1 377 72.4
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.4e-154 550.1 377 72.4
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 1.8e-154 549.7 371 73.9
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 5.3e-154 548.1 373 72.9
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 5.3e-154 548.1 358 77.9
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 6.9e-154 547.7 377 74.0
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 9.0e-154 547.4 377 72.9
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 1.2e-153 547.0 377 71.9
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.5e-153 546.6 377 72.7
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 1.5e-153 546.6 373 73.2
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 2.6e-153 545.8 373 72.9
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 2.6e-153 545.8 383 72.8
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 2.6e-153 545.8 373 73.5
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 3.4e-153 545.4 375 73.6
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 1.3e-152 543.5 376 73.1
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.3e-152 543.5 375 72.5
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 1.7e-152 543.1 379 71.8
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 2.2e-152 542.7 373 72.9
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 2.9e-152 542.3 378 73.3
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 4.9e-152 541.6 377 72.1
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 6.5e-152 541.2 367 73.8
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 4.2e-151 538.5 372 72.3
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.2e-151 538.5 390 70.5
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 4.2e-151 538.5 372 72.8
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 5.5e-151 538.1 357 75.4
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 1.6e-150 536.6 386 70.2
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 3.0e-149 532.3 371 72.8
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 3.0e-149 532.3 378 70.9
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 9.6e-148 527.3 375 70.1
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 3.7e-147 525.4 376 71.0
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 2.4e-146 522.7 374 69.5
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 5.3e-146 521.5 371 70.9
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.6e-145 519.2 358 72.1
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 5.8e-145 518.1 368 70.7
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.0e-144 517.3 377 70.0
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 1.9e-143 513.1 356 72.8
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 7.9e-142 507.7 368 69.0
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 1.0e-141 507.3 371 66.6
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 3.0e-141 505.8 377 68.7
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 3.9e-141 505.4 372 67.2
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 5.1e-141 505.0 368 68.5
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 8.7e-141 504.2 369 68.0
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 8.7e-141 504.2 371 67.1
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 2.5e-140 502.7 370 65.9
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 3.3e-140 502.3 369 67.8
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 9.7e-140 500.7 373 65.7
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.3e-139 500.4 370 66.2
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 1.1e-138 497.3 373 64.9
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 5.3e-138 495.0 376 68.4
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 5.3e-138 495.0 389 66.8
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 5.3e-138 495.0 389 66.8
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 5.3e-138 495.0 370 68.1
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 1.0e-136 490.7 376 65.2
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 9.4e-135 484.2 372 64.8
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 9.4e-135 484.2 373 65.1
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 2.1e-134 483.0 339 71.1
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 3.6e-134 482.3 372 65.9
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 5.1e-133 478.4 376 66.5
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 2.5e-132 476.1 350 67.4
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 4.3e-132 475.3 351 67.2
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 4.5e-129 465.3 373 63.0
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 5.9e-129 464.9 373 63.0
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 6.5e-128 461.5 373 61.7
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 9.4e-127 457.6 373 61.7
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 2.7e-126 456.1 374 62.0
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 5.1e-125 451.8 384 59.9
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 4.4e-124 448.7 374 61.2
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 1.3e-123 447.2 335 66.3
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 4.1e-122 442.2 372 60.2
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 5.3e-122 441.8 363 61.7
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.1e-119 434.1 300 72.3
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.6e-118 430.3 352 65.6
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.8e-117 426.8 379 57.0
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 5.9e-113 411.8 354 60.5
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.2e-110 404.1 355 56.9
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 1.4e-109 400.6 420 52.1
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 5.2e-109 398.7 266 74.8
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 1.1e-106 391.0 340 58.5
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 3.1e-106 389.4 254 76.4
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 2.7e-105 386.3 371 56.6
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 2.7e-102 376.3 354 55.9
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.7e-102 376.3 276 67.4
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.6e-94 350.5 354 53.1
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.2e-89 334.3 365 52.1
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 1.0e-85 321.2 225 68.0
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 1.5e-84 317.4 227 67.8
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 5.8e-76 288.9 316 52.8
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 4.6e-73 279.3 202 71.3
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 6.4e-59 232.3 311 43.4
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 6.6e-56 222.2 182 59.3
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.9e-55 220.7 155 72.3
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 9.3e-42 175.3 117 74.4
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 1.3e-40 171.4 105 79.0
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 3.0e-40 170.2 155 56.1
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.9e-39 167.5 176 50.0
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 3.3e-39 166.8 116 69.0
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 3.3e-39 166.8 198 48.5
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 2.8e-38 163.7 112 68.8
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 5.3e-37 159.5 112 68.8
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 6.9e-37 159.1 112 67.9
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 9.0e-37 158.7 111 68.5
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 9.0e-37 158.7 117 67.5
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 1.5e-36 157.9 136 58.8
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 1.0e-35 155.2 112 67.9
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 4.6e-33 146.4 159 52.2
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 5.1e-32 142.9 100 68.0
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 2.3e-24 117.5 348 27.3
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.9e-23 114.4 333 27.3
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.1e-21 108.6 73 75.3
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 6.9e-21 105.9 104 55.8
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 2.0e-20 104.4 91 58.2
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.7e-19 101.3 63 79.4
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 1.7e-19 101.3 118 50.0
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 5.5e-18 96.3 73 63.0
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 1.4e-16 91.7 91 54.9
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 1.8e-16 91.3 76 61.8
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 2.3e-16 90.9 57 75.4
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 2.3e-16 90.9 74 58.1
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 9.7e-15 85.5 66 65.2
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 6.3e-14 82.8 141 38.3
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 1.8e-13 81.3 73 53.4
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 1.8e-13 81.3 73 53.4
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 4.1e-13 80.1 61 72.1
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 6.9e-13 79.3 91 48.4
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 6.9e-13 79.3 57 68.4
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 6.5e-11 72.8 70 51.4
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 4.2e-10 70.1 59 55.9
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 5.5e-10 69.7 388 25.8
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 2.1e-09 67.8 76 50.0
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 3.6e-09 67.0 60 55.0
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 3.6e-09 67.0 60 55.0
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 3.6e-09 67.0 60 55.0
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 3.6e-09 67.0 60 55.0
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 7.9e-09 65.9 361 26.3
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 1.8e-08 64.7 354 26.3
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 2.3e-08 64.3 60 55.0
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 3.9e-08 63.5 363 25.6
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 3.9e-08 63.5 48 64.6
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 6.7e-08 62.8 335 24.8
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 6.7e-08 62.8 261 28.0
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 1.1e-07 62.0 361 25.8
SMO270G0066 Selaginella moellendorffii HOM05D003438 ORTHO05D004235 2.0e-07 61.2 348 24.4
VMungo1080G0632 Vigna mungo HOM05D003438 ORTHO05D004235 7.4e-07 59.3 257 24.9
SEGI_27375 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 1.3e-06 58.5 261 27.2
Lalb_Chr16g0392021 Lupinus albus HOM05D003438 ORTHO05D004235 3.7e-06 57.0 402 24.9


User provided reference genes

Program Settings