Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0807G116 Amborella trichopoda HOM05D007627 ORTHO05D009640 1.3e-51 206.1 102 100.0
ATR0414G001 Amborella trichopoda HOM05D007627 ORTHO05D009640 7.5e-31 137.1 72 94.4
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 6.1e-17 90.9 83 60.2
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 3.4e-15 85.1 95 55.8
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 1.3e-14 83.2 80 55.0
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 1.7e-14 82.8 95 53.7
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 2.2e-14 82.4 76 57.9
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 6.4e-14 80.9 76 55.3
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 6.4e-14 80.9 85 55.3
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 8.3e-14 80.5 95 54.7
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 1.1e-13 80.1 92 51.1
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 1.1e-13 80.1 94 52.1
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 1.8e-13 79.3 98 54.1
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 2.4e-13 79.0 80 53.8
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 7.0e-13 77.4 81 55.6
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 9.2e-13 77.0 82 59.8
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 1.6e-12 76.3 90 52.2
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 2.0e-12 75.9 95 53.7
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 2.7e-12 75.5 83 50.6
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 3.5e-12 75.1 95 46.3
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 4.6e-12 74.7 95 48.4
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 6.0e-12 74.3 80 52.5
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 7.8e-12 73.9 73 60.3
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 7.8e-12 73.9 92 51.1
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 1.3e-11 73.2 95 52.6
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.7e-11 72.8 94 47.9
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 1.7e-11 72.8 98 51.0
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 3.0e-11 72.0 92 48.9
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 3.9e-11 71.6 80 55.0
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 3.9e-11 71.6 95 48.4
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 5.0e-11 71.2 84 56.0
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 5.0e-11 71.2 84 56.0
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 6.6e-11 70.9 92 46.7
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 8.6e-11 70.5 92 47.8
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 8.6e-11 70.5 77 50.6
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 1.1e-10 70.1 82 57.3
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.5e-10 69.7 95 48.4
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 1.5e-10 69.7 95 49.5
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 1.5e-10 69.7 93 51.6
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 1.5e-10 69.7 83 54.2
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 1.5e-10 69.7 83 54.2
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 2.5e-10 68.9 82 50.0
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 2.5e-10 68.9 96 45.8
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 3.3e-10 68.6 92 45.7
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 4.3e-10 68.2 80 48.8
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 4.3e-10 68.2 76 50.0
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 5.6e-10 67.8 76 50.0
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 5.6e-10 67.8 74 50.0
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 7.3e-10 67.4 80 47.5
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 7.3e-10 67.4 80 53.8
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 7.3e-10 67.4 88 46.6
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 9.5e-10 67.0 85 49.4
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 1.6e-09 66.2 71 50.7
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 1.6e-09 66.2 83 48.2
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 2.1e-09 65.9 61 57.4
CDE04G1409 Ceratophyllum demersum HOM05D000443 ORTHO05D001066 2.1e-09 65.9 96 47.9
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 2.1e-09 65.9 77 51.9
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 2.8e-09 65.5 91 40.7
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 3.6e-09 65.1 94 42.6
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 4.7e-09 64.7 95 45.3
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 8.0e-09 63.9 85 48.2
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 8.0e-09 63.9 85 48.2
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 8.0e-09 63.9 87 48.3
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 8.0e-09 63.9 77 49.4
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 1.1e-08 63.5 84 47.6
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 1.1e-08 63.5 75 49.3
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 1.1e-08 63.5 77 50.6
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 2.3e-08 62.4 77 48.1
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 4.0e-08 61.6 81 46.9
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 4.0e-08 61.6 75 48.0
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 5.2e-08 61.2 73 50.7
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 5.2e-08 61.2 77 49.4
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 6.8e-08 60.8 58 58.6
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 1.5e-07 59.7 77 46.8
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 1.5e-07 59.7 77 46.8
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 1.5e-07 59.7 81 46.9
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 2.0e-07 59.3 81 40.7
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 4.4e-07 58.2 63 50.8
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 5.8e-07 57.8 64 53.1
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 5.8e-07 57.8 86 46.5
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 7.5e-07 57.4 85 40.0
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 7.5e-07 57.4 62 48.4
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 6.4e-06 54.3 64 50.0
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 6.4e-06 54.3 90 42.2


User provided reference genes

Program Settings