Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.7e-231 805.8 461 100.0
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 8.1e-109 398.3 451 50.6
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 4.5e-107 392.5 473 48.6
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 2.4e-105 386.7 462 49.8
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 3.2e-105 386.3 484 48.8
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 1.0e-103 381.3 462 47.6
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 6.7e-103 378.6 457 47.3
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.5e-102 376.7 459 47.9
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 4.3e-102 375.9 468 48.3
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 9.6e-102 374.8 454 52.0
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.6e-101 374.0 441 48.1
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.6e-101 374.0 452 46.9
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 1.1e-100 371.3 468 46.8
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 1.8e-100 370.5 471 46.3
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.4e-100 370.2 464 48.1
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 3.1e-100 369.8 455 48.1
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 6.9e-100 368.6 460 46.7
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 2.9e-98 363.2 454 46.7
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.5e-97 360.1 462 57.1
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 9.3e-97 358.2 453 47.2
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.3e-95 354.4 461 46.6
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 6.7e-95 352.1 454 44.7
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 6.7e-95 352.1 452 46.7
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 6.7e-95 352.1 457 45.7
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 1.1e-94 351.3 453 44.6
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 2.5e-94 350.1 462 45.2
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 9.6e-94 348.2 466 45.1
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 9.6e-94 348.2 460 43.9
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.6e-93 347.4 461 46.2
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 4.8e-93 345.9 458 46.3
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 4.8e-93 345.9 457 45.3
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 6.3e-93 345.5 460 44.8
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 8.2e-93 345.1 465 44.9
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.1e-92 344.7 465 45.8
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.4e-92 344.4 467 45.2
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 2.4e-92 343.6 441 45.6
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 9.0e-92 341.7 496 46.2
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 9.0e-92 341.7 453 44.8
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 1.2e-91 341.3 464 45.5
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 1.2e-91 341.3 459 42.9
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 7.6e-91 338.6 464 44.2
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 1.3e-90 337.8 470 43.0
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 1.3e-90 337.8 464 44.6
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 2.2e-90 337.0 465 44.1
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 2.2e-90 337.0 472 44.5
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 3.8e-90 336.3 459 43.4
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.0e-90 335.9 466 42.1
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 6.5e-90 335.5 458 43.4
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 8.5e-90 335.1 453 44.2
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 8.5e-90 335.1 451 44.1
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.9e-89 334.0 464 42.9
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 2.5e-89 333.6 466 41.8
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 3.2e-89 333.2 454 44.1
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 3.2e-89 333.2 452 43.4
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 4.2e-89 332.8 459 47.1
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 4.2e-89 332.8 457 45.1
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 5.5e-89 332.4 475 43.6
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.1e-88 330.5 466 42.5
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.7e-88 330.1 458 43.0
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.7e-88 330.1 461 44.3
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 3.6e-88 329.7 456 43.9
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.3e-87 327.8 461 43.2
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 1.3e-87 327.8 472 42.8
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.8e-87 327.4 466 41.4
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.3e-87 327.0 463 41.3
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.3e-87 327.0 463 41.3
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 1.1e-86 324.7 460 43.9
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 1.1e-86 324.7 451 43.7
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.1e-86 324.7 453 43.9
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.5e-86 324.3 455 42.6
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.5e-86 324.3 461 43.0
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 3.3e-86 323.2 456 43.4
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.3e-86 323.2 469 43.5
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 4.3e-86 322.8 457 44.2
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 5.7e-86 322.4 446 44.4
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 7.4e-86 322.0 468 42.3
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 9.7e-86 321.6 462 43.3
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 3.7e-85 319.7 457 43.8
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 3.7e-85 319.7 440 44.3
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 4.8e-85 319.3 453 41.9
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 6.3e-85 318.9 456 43.6
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 6.3e-85 318.9 454 43.4
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 8.2e-85 318.5 464 42.0
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.8e-84 317.4 449 44.3
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 3.1e-84 316.6 464 42.0
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 3.1e-84 316.6 455 44.2
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 4.1e-84 316.2 462 42.4
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 6.9e-84 315.5 454 43.8
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 5.9e-83 312.4 462 40.7
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.3e-82 311.2 456 41.7
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 2.9e-82 310.1 463 40.8
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.8e-82 309.7 483 40.8
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.9e-81 307.4 439 42.6
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 5.5e-81 305.8 463 42.3
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.2e-80 304.7 482 40.7
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 3.6e-80 303.1 433 44.8
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 6.1e-80 302.4 457 46.2
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 7.9e-80 302.0 439 43.3
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.3e-79 300.4 457 42.0
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 8.2e-77 292.0 465 39.8
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.1e-76 291.6 447 40.5
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.4e-76 291.2 458 41.5
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 1.8e-76 290.8 447 40.5
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.8e-76 290.8 460 40.0
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.4e-76 290.4 235 60.9
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.5e-75 287.7 448 39.7
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 2.6e-75 287.0 307 49.8
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 3.4e-75 286.6 456 39.7
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 5.0e-74 282.7 457 40.5
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 6.1e-72 275.8 461 39.7
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.0e-71 275.0 374 45.7
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 4.4e-70 269.6 269 52.4
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.6e-64 250.0 452 37.6
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 6.3e-61 239.2 441 36.1
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.3e-58 231.5 279 44.1
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.1e-57 228.4 399 39.1
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 4.2e-57 226.5 461 38.4
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 5.4e-52 209.5 435 35.9
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 2.3e-50 204.1 464 33.6
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 2.1e-48 197.6 169 55.0
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 3.6e-48 196.8 184 57.6
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 2.3e-47 194.1 300 41.3
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.1e-41 175.3 438 32.0
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 9.8e-38 162.2 158 51.9
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.8e-36 157.9 163 47.9
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 8.6e-34 149.1 386 32.1
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 3.6e-32 143.7 117 57.3
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 8.0e-32 142.5 178 44.9
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 6.8e-31 139.4 273 34.8
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 3.4e-30 137.1 274 34.3
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 1.1e-20 105.5 251 33.9
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 9.2e-20 102.4 96 51.0
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 4.6e-19 100.1 110 50.0
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 6.6e-18 96.3 145 36.6
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 3.0e-10 70.9 232 28.9
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 5.1e-10 70.1 98 39.8
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.9e-09 68.2 75 46.7
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 1.6e-08 65.1 49 67.3
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.6e-08 65.1 49 67.3
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 8.1e-08 62.8 49 67.3
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 2.4e-07 61.2 78 38.5
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 6.9e-07 59.7 47 63.8


User provided reference genes

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