Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0807G108 Amborella trichopoda HOM05D005252 ORTHO05D006788 1.2e-177 626.3 306 100.0
Hma1.2p1_0158F.1_g069575 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 8.7e-91 337.8 286 59.4
MBI06_g19632_MAGBIO Magnolia biondii HOM05D005252 ORTHO05D006788 3.3e-90 335.9 285 60.0
THA.LOC104820865 Tarenaya hassleriana HOM05D005252 ORTHO05D006788 1.6e-89 333.6 285 59.6
TAR622G0726 Trochodendron aralioides HOM05D005252 ORTHO05D006788 8.1e-89 331.3 290 58.3
Dinv19082 Davidia involucrata HOM05D000783 ORTHO05D000705 9.0e-88 327.8 290 56.9
Actinidia28776 Actinidia chinensis HOM05D005252 ORTHO05D006788 3.4e-87 325.9 284 57.4
CANSAT56G0277 Cannabis sativa HOM05D005252 ORTHO05D006788 4.4e-87 325.5 284 57.4
Cfa007750 Carpinus fangiana HOM05D005252 ORTHO05D006788 4.4e-87 325.5 285 57.5
Haze_14323 Corylus avellana HOM05D005252 ORTHO05D006788 9.9e-87 324.3 286 57.0
Cpa.g.sc178.38 Carica papaya HOM05D005252 ORTHO05D006788 1.7e-86 323.6 286 58.4
CSS0014125 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.1e-85 320.9 295 55.3
Atru.chr1.2124 Acer truncatum HOM05D005252 ORTHO05D006788 4.2e-85 318.9 289 56.4
Nn5g27060 Nelumbo nucifera HOM05D005252 ORTHO05D006788 1.2e-84 317.4 278 58.6
CSS0009455 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 4.6e-84 315.5 304 53.3
Sabra04G0054100 Salix brachista HOM05D005252 ORTHO05D006788 4.6e-84 315.5 287 54.7
Prupe.3G014000 Prunus persica HOM05D005252 ORTHO05D006788 6.0e-84 315.1 284 58.1
TWI74G0077 Tripterygium wilfordii HOM05D005252 ORTHO05D006788 1.3e-83 313.9 286 55.6
PSO063G5026 Papaver somniferum HOM05D005252 ORTHO05D006788 1.7e-83 313.5 292 53.4
Cc07_g12720 Coffea canephora HOM05D005252 ORTHO05D006788 2.3e-83 313.2 289 56.7
Potri.004G081400 Populus trichocarpa HOM05D005252 ORTHO05D006788 3.9e-83 312.4 291 55.0
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 8.7e-83 311.2 283 56.5
PSO782G3987 Papaver somniferum HOM05D005252 ORTHO05D006788 8.7e-83 311.2 292 53.1
Lj2C511T2 Lonicera japonica HOM05D005252 ORTHO05D006788 1.5e-82 310.5 284 55.6
AL6G28290 Arabidopsis lyrata HOM05D005252 ORTHO05D006788 4.3e-82 308.9 283 56.2
arahy.Tifrunner.gnm1.ann1.2Q625H Arachis hypogaea HOM05D005252 ORTHO05D006788 7.3e-82 308.1 286 53.8
RcHm_v2.0_Chr3g0488621 Rosa chinensis HOM05D005252 ORTHO05D006788 7.3e-82 308.1 289 56.7
GSVIVG01035253001 Vitis vinifera HOM05D005252 ORTHO05D006788 1.3e-81 307.4 284 54.6
MD17G1287300 Malus domestica HOM05D005252 ORTHO05D006788 2.8e-81 306.2 281 56.6
LjContig00141g0010829 Lotus japonicus HOM05D005252 ORTHO05D006788 4.8e-81 305.4 289 53.3
Lalb_Chr04g0251511 Lupinus albus HOM05D005252 ORTHO05D006788 4.8e-81 305.4 289 53.3
Carub.0006s1543 Capsella rubella HOM05D005252 ORTHO05D006788 8.1e-81 304.7 287 55.7
QL02p064187 Quercus lobata HOM05D005252 ORTHO05D006788 8.1e-81 304.7 290 53.8
Ca_05755_v3 Cicer arietinum L. HOM05D005252 ORTHO05D006788 1.1e-80 304.3 286 53.1
HPP92_025609 Vanilla planifolia HOM05D005252 ORTHO05D006788 1.8e-80 303.5 282 53.9
arahy.Tifrunner.gnm1.ann1.UX6KKC Arachis hypogaea HOM05D005252 ORTHO05D006788 3.1e-80 302.8 286 52.8
FAN28G2525 Fragaria x ananassa HOM05D005252 ORTHO05D006788 3.1e-80 302.8 289 54.3
FAN28G2815 Fragaria x ananassa HOM05D005252 ORTHO05D006788 3.1e-80 302.8 289 54.3
Aqoxy3G04163 Aquilegia oxysepala HOM05D005252 ORTHO05D006788 5.3e-80 302.0 292 54.8
Sp6g26990 Schrenkiella parvula HOM05D005252 ORTHO05D006788 2.0e-79 300.1 285 56.5
CARHR195970 Cardamine hirsuta HOM05D005252 ORTHO05D006788 2.6e-79 299.7 282 56.0
A02p04080 Brassica napus HOM05D005252 ORTHO05D006788 4.5e-79 298.9 282 55.0
Eucgr.F02912 Eucalyptus grandis HOM05D005252 ORTHO05D006788 4.5e-79 298.9 288 54.2
Phvul.008G241400 Phaseolus vulgaris HOM05D005252 ORTHO05D006788 4.5e-79 298.9 290 52.4
DCAR_003403 Daucus carota HOM05D005252 ORTHO05D006788 5.8e-79 298.5 286 51.0
VMungo0647G0073 Vigna mungo HOM05D005252 ORTHO05D006788 5.8e-79 298.5 291 52.6
Glyma.14G209800 Glycine max HOM05D005252 ORTHO05D006788 1.7e-78 297.0 289 50.9
Ah.06g191550 Amaranthus hybridus HOM05D005252 ORTHO05D006788 3.8e-78 295.8 287 56.1
Rhsim08G0021900 Rhododendron simsii HOM05D005252 ORTHO05D006788 1.1e-77 294.3 283 54.4
Aa31LG11G12430 Aethionema arabicum HOM05D005252 ORTHO05D006788 1.4e-77 293.9 283 54.4
Ciclev10011537m.g Citrus clementina HOM05D005252 ORTHO05D006788 1.9e-77 293.5 285 55.1
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 1.9e-77 293.5 293 52.9
Medtr5g076640 Medicago truncatula HOM05D005252 ORTHO05D006788 1.9e-77 293.5 289 52.9
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 2.4e-77 293.1 283 53.4
EL10Ac4g08917 Beta vulgaris HOM05D005252 ORTHO05D006788 3.2e-77 292.7 288 54.9
BcaNung00410 Brassica carinata HOM05D005252 ORTHO05D006788 3.2e-77 292.7 284 54.6
BraA02t05370Z Brassica rapa HOM05D005252 ORTHO05D006788 3.2e-77 292.7 282 53.9
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 1.2e-76 290.8 283 53.0
TPR.G5289 Trifolium pratense HOM05D005252 ORTHO05D006788 1.6e-76 290.4 282 52.1
Sed0007469 Sechium edule HOM05D005252 ORTHO05D006788 2.1e-76 290.0 280 54.3
ClCG05G011370 Citrullus lanatus HOM05D005252 ORTHO05D006788 3.5e-76 289.3 293 53.6
FvH4_1g27420 Fragaria vesca HOM05D005252 ORTHO05D006788 4.6e-76 288.9 290 53.4
SGA_v2.0_scaffold115G32046 Striga asiatica HOM05D005252 ORTHO05D006788 4.6e-76 288.9 290 50.7
Nitab4.5_0000483g0240 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.8e-75 287.0 277 53.8
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 3.9e-75 285.8 284 52.8
COL.COLO4_20051 Corchorus olitorius HOM05D005252 ORTHO05D006788 6.7e-75 285.0 277 51.3
PGR004G2027 Punica granatum HOM05D005252 ORTHO05D006788 1.1e-74 284.3 285 52.6
Zm00001eb320090 Zea mays HOM05D005252 ORTHO05D006788 3.3e-74 282.7 287 51.9
arahy.Tifrunner.gnm1.ann1.Y82BEI Arachis hypogaea HOM05D005252 ORTHO05D006788 9.6e-74 281.2 286 50.0
Psat2g042800 Pisum sativum HOM05D005252 ORTHO05D006788 9.6e-74 281.2 284 52.1
Sopen02g025950 Solanum pennellii HOM05D005252 ORTHO05D006788 2.1e-73 280.0 287 50.2
Solyc02g081320.4 Solanum lycopersicum HOM05D005252 ORTHO05D006788 6.2e-73 278.5 287 49.8
SalBow5G4267 Salvia bowleyana HOM05D005252 ORTHO05D006788 2.4e-72 276.6 289 47.8
HanXRQChr14g0443361 Helianthus annuus HOM05D005252 ORTHO05D006788 5.3e-72 275.4 296 48.3
SHI24494 Sapria himalayana HOM05D005252 ORTHO05D006788 1.2e-71 274.2 291 50.2
FAN19G2162 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.6e-71 273.1 253 56.1
PGSC0003DMG400016732 Solanum tuberosum HOM05D005252 ORTHO05D006788 3.4e-71 272.7 281 49.8
Os07g0471100 Oryza sativa ssp. japonica HOM05D005252 ORTHO05D006788 5.8e-71 271.9 279 52.3
SalBow5G4252 Salvia bowleyana HOM05D005252 ORTHO05D006788 1.7e-70 270.4 286 46.5
Lsat_1_v5_gn_2_71861 Lactuca sativa HOM05D005252 ORTHO05D006788 2.2e-70 270.0 289 48.4
Duzib133G0566 Durio zibethinus HOM05D005252 ORTHO05D006788 2.9e-70 269.6 281 48.0
ECA238G3559 Erigeron canadensis HOM05D005252 ORTHO05D006788 4.9e-70 268.9 303 49.2
Gohir.A12G052400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.9e-69 266.9 286 49.0
Gohir.D12G051000 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.1e-68 263.5 286 47.9
Gorai.008G054300 Gossypium raimondii HOM05D005252 ORTHO05D006788 3.5e-68 262.7 286 47.9
Nitab4.5_0011448g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 6.0e-68 261.9 291 49.8
Nitab4.5_0009456g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.5e-66 257.3 288 49.0
Hma1.2p1_0158F.1_g069580 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 1.3e-65 254.2 218 58.7
Nitab4.5_0008137g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.6e-65 253.8 301 47.5
CDE04G0131 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 5.3e-64 248.8 207 58.0
FAN23G1936 Fragaria x ananassa HOM05D005252 ORTHO05D006788 5.8e-63 245.4 307 46.6
Oeu060821.2 Olea europaea HOM05D005252 ORTHO05D006788 1.3e-62 244.2 294 45.6
vmacro18507 Vaccinium macrocarpon HOM05D005252 ORTHO05D006788 1.7e-62 243.8 292 47.9
CSS0013830 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.8e-59 233.8 287 46.7
AUR62004761 Chenopodium quinoa HOM05D005252 ORTHO05D006788 2.3e-59 233.4 289 46.0
SEGI_32636 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 6.7e-59 231.9 283 45.2
Migut.K00975 Erythranthe guttata HOM05D005252 ORTHO05D006788 4.3e-58 229.2 283 45.6
TAR622G0830 Trochodendron aralioides HOM05D005252 ORTHO05D006788 1.4e-56 224.2 191 58.6
AT5G17240 Arabidopsis thaliana HOM05D005252 ORTHO05D006788 2.0e-55 220.3 214 54.2
SMO244G0074 Selaginella moellendorffii HOM05D005252 ORTHO05D006788 2.6e-55 219.9 273 44.0
Hund22213 Selenicereus undatus HOM05D005252 ORTHO05D006788 1.3e-54 217.6 331 40.2
DCAR_003402 Daucus carota HOM05D005252 ORTHO05D006788 5.0e-54 215.7 287 40.8
CiPaw.04G049400 Carya illinoinensis HOM05D005252 ORTHO05D006788 3.2e-53 213.0 191 57.6
Peaxi162Scf00713g00214 Petunia axillaris HOM05D005252 ORTHO05D006788 4.2e-53 212.6 283 43.1
CAN.G1681.16 Capsicum annuum HOM05D005252 ORTHO05D006788 4.6e-52 209.1 216 48.6
Sc20g0000830 Simmondsia chinensis HOM05D005252 ORTHO05D006788 6.7e-51 205.3 186 54.3
AUR62037491 Chenopodium quinoa HOM05D005252 ORTHO05D006788 1.1e-50 204.5 195 54.4
CsaV3_3G021090 Cucumis sativus L. HOM05D005252 ORTHO05D006788 4.3e-50 202.6 189 54.5
MELO3C020240.2 Cucumis melo HOM05D005252 ORTHO05D006788 1.4e-45 187.6 188 53.2
Mapoly0060s0113 Marchantia polymorpha HOM05D005252 ORTHO05D006788 7.9e-44 181.8 189 48.7
unitig_748.g8447 Utricularia gibba HOM05D001485 ORTHO05D001384 7.9e-44 181.8 283 38.9
Pp3c1_22230 Physcomitrium patens HOM05D005252 ORTHO05D006788 1.8e-43 180.6 213 43.7
Thecc.04G057900 Theobroma cacao HOM05D005252 ORTHO05D006788 1.3e-33 147.9 140 50.7
CBR_g38413 Chara braunii HOM05D005252 ORTHO05D006788 1.3e-30 137.9 281 34.9
AagrBONN_evm.TU.Sc2ySwM_344.1683 Anthoceros agrestis HOM05D005252 ORTHO05D006788 9.4e-29 131.7 162 43.2
Cre10.g437829 Chlamydomonas reinhardtii HOM05D005252 ORTHO05D006788 8.0e-28 128.6 186 37.6
arahy.Tifrunner.gnm1.ann1.P1K6DT Arachis hypogaea HOM05D005252 ORTHO05D006788 4.0e-27 126.3 122 53.3
CSS0049209 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 2.0e-26 124.0 125 53.6
PRCOL_00004140 Prasinoderma coloniale HOM05D005252 ORTHO05D006788 2.2e-25 120.6 288 31.9
MCO06G238 Micromonas commoda HOM05D005252 ORTHO05D006788 8.3e-25 118.6 249 29.7
Gohir.A06G122900 Gossypium hirsutum HOM05D005252 ORTHO05D006788 4.2e-21 106.3 97 49.5
Gohir.A01G173232 Gossypium hirsutum HOM05D005252 ORTHO05D006788 5.5e-21 105.9 96 50.0
Gohir.A02G112713 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.2e-20 104.8 105 45.7
Gohir.A08G081162 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.4e-19 101.3 96 50.0
Gohir.A01G088400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 4.0e-19 99.8 102 47.1
SEGI_29343 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 2.8e-17 93.6 90 56.7
CSS0015528 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.3e-14 84.7 74 58.1
Gohir.A11G239440 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.3e-14 84.7 73 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1682 Anthoceros agrestis HOM05D005252 ORTHO05D006788 2.8e-12 77.0 98 46.9
Gohir.A13G083166 Gossypium hirsutum HOM05D005252 ORTHO05D006788 6.1e-12 75.9 89 40.4
Os09g0411650 Oryza sativa ssp. japonica HOM05D005456 ORTHO05D006805 2.0e-10 70.9 202 27.7
Psat6g212680 Pisum sativum HOM05D005252 ORTHO05D006788 7.5e-10 68.9 83 47.0
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 3.7e-09 66.6 176 27.3
Pp3c4_19510 Physcomitrium patens HOM05D004224 ORTHO05D006437 3.7e-09 66.6 209 24.9
SMO169G0173 Selaginella moellendorffii HOM05D007044 ORTHO05D008981 4.9e-09 66.2 202 28.7
DCAR_030997 Daucus carota HOM05D005456 ORTHO05D006805 4.1e-08 63.2 172 25.0
SEGI_13327 Sequoiadendron giganteum HOM05D004224 ORTHO05D006437 4.1e-08 63.2 230 23.9
Oeu024984.1 Olea europaea HOM05D005252 ORTHO05D006788 1.2e-07 61.6 48 52.1
AagrBONN_evm.TU.Sc2ySwM_344.1689 Anthoceros agrestis HOM05D005252 ORTHO05D006788 1.6e-07 61.2 63 54.0
MCO13G149 Micromonas commoda HOM05D004224 ORTHO05D016538 3.5e-07 60.1 248 25.0
Zm00001eb312420 Zea mays HOM05D005456 ORTHO05D006805 4.6e-07 59.7 271 23.6
Gohir.A07G145950 Gossypium hirsutum HOM05D005252 ORTHO05D006788 5.0e-06 56.2 49 46.9


User provided reference genes

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