Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 3.4e-214 748.0 377 100.0
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 7.5e-161 570.9 326 83.7
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 1.1e-159 567.0 361 78.7
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 7.7e-158 560.8 376 75.8
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 6.1e-155 551.2 365 75.3
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 6.1e-155 551.2 382 71.7
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 1.4e-154 550.1 365 75.1
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 2.3e-154 549.3 379 73.6
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 3.0e-154 548.9 372 74.2
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 5.2e-154 548.1 362 74.6
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 8.9e-154 547.4 378 73.5
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 2.6e-153 545.8 380 72.6
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 2.6e-153 545.8 319 81.2
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 5.7e-153 544.7 323 80.5
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.7e-152 543.1 358 74.9
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 2.2e-152 542.7 365 72.6
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 3.7e-152 542.0 381 71.1
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 1.4e-151 540.0 376 72.1
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.8e-151 539.7 335 77.6
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 2.4e-151 539.3 365 73.2
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 5.4e-151 538.1 319 80.3
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 5.4e-151 538.1 384 69.3
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 7.0e-151 537.7 365 73.7
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.2e-150 537.0 319 80.3
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 1.6e-150 536.6 363 73.0
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 1.6e-150 536.6 397 67.5
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 2.0e-150 536.2 327 79.8
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 2.7e-150 535.8 321 80.4
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 3.5e-150 535.4 367 74.1
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 5.9e-150 534.6 362 74.3
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 7.8e-150 534.3 376 70.7
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 1.0e-149 533.9 380 69.5
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.0e-149 533.9 363 72.7
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 1.3e-149 533.5 318 79.6
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.3e-149 533.5 318 79.2
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 2.3e-149 532.7 374 71.4
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 3.9e-149 531.9 318 78.9
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 5.0e-149 531.6 318 78.6
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 6.6e-149 531.2 359 72.4
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 1.1e-148 530.4 362 72.4
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 1.9e-148 529.6 377 70.3
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 2.5e-148 529.3 318 78.0
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 4.3e-148 528.5 318 78.0
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 5.6e-148 528.1 320 78.1
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 7.3e-148 527.7 371 70.6
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 7.3e-148 527.7 345 74.5
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 1.2e-147 526.9 369 71.0
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 1.2e-147 526.9 320 77.2
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 1.6e-147 526.6 354 73.4
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.1e-147 526.2 362 71.3
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 2.1e-147 526.2 381 68.8
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 2.8e-147 525.8 319 79.3
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 4.7e-147 525.0 316 78.5
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.8e-146 523.1 373 69.4
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 1.8e-146 523.1 364 69.5
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 1.8e-146 523.1 320 77.2
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 4.0e-146 521.9 376 69.7
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 6.8e-146 521.2 373 71.6
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 6.8e-146 521.2 317 77.0
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 1.2e-145 520.4 328 77.1
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.5e-145 520.0 354 72.6
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 1.5e-145 520.0 354 72.9
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 2.0e-145 519.6 370 70.5
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 2.6e-145 519.2 322 77.0
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 3.4e-145 518.8 328 76.2
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 4.4e-145 518.5 319 77.7
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 4.4e-145 518.5 319 77.7
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 4.4e-145 518.5 369 71.5
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 1.3e-144 516.9 351 72.6
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 2.2e-144 516.2 299 82.6
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 2.9e-144 515.8 318 78.0
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 2.9e-144 515.8 316 78.2
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 4.9e-144 515.0 366 69.7
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 4.9e-144 515.0 316 77.8
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 6.4e-144 514.6 316 76.9
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 1.1e-143 513.8 375 69.6
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.2e-142 510.4 299 81.3
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.0e-141 507.3 318 76.7
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 2.3e-141 506.1 362 68.8
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 1.6e-139 500.0 362 68.0
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 8.9e-138 494.2 380 66.1
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 2.0e-137 493.0 365 70.1
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 4.6e-134 481.9 276 83.3
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.0e-130 468.8 333 71.2
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 1.3e-128 463.8 368 64.9
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 1.3e-125 453.8 276 77.2
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 6.6e-125 451.4 268 81.3
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 1.2e-121 440.7 318 65.1
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.5e-121 440.3 268 78.0
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 3.4e-121 439.1 315 64.1
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 1.3e-120 437.2 267 77.9
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 2.3e-117 426.4 376 61.2
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 3.9e-117 425.6 318 62.9
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 5.1e-117 425.2 259 79.9
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 2.6e-113 412.9 322 59.6
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 4.4e-113 412.1 291 71.8
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.3e-101 374.0 297 64.0
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 6.7e-101 371.7 284 68.3
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 1.9e-100 370.2 267 68.2
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.8e-99 365.5 283 68.6
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 1.5e-97 360.5 290 64.1
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 2.4e-90 336.7 229 71.6
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 3.6e-78 296.2 269 62.1
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 2.0e-76 290.4 322 45.3
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 2.0e-76 290.4 322 45.3
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 8.5e-72 275.0 346 43.1
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 1.9e-71 273.9 311 45.7
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 7.2e-71 271.9 170 76.5
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 2.7e-70 270.0 273 53.5
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 2.7e-70 270.0 209 66.0
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 6.3e-67 258.8 155 80.6
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.6e-62 244.2 166 74.7
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.2e-57 228.0 130 83.1
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 1.5e-39 167.9 393 32.1
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-34 149.4 108 66.7
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 2.0e-33 147.5 91 73.6
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.9e-31 141.0 85 77.6
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 5.8e-28 129.4 79 75.9
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 3.2e-26 123.6 90 66.7
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 1.9e-23 114.4 83 62.7
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 2.2e-19 100.9 105 51.4
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 2.7e-17 94.0 74 66.2
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.5e-17 93.6 61 72.1
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.5e-17 93.6 61 72.1
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 9.5e-15 85.5 59 74.6
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.8e-14 84.0 54 74.1
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 1.1e-13 82.0 47 83.0
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 3.1e-13 80.5 58 67.2
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 1.2e-12 78.6 101 48.5
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 2.0e-12 77.8 54 63.0
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 2.0e-12 77.8 95 50.5
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 4.4e-12 76.6 90 53.3
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 1.3e-11 75.1 294 26.5
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 2.2e-11 74.3 85 49.4
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 7.1e-10 69.3 49 69.4
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 7.1e-10 69.3 290 24.8
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 2.1e-09 67.8 288 24.3
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 2.1e-09 67.8 290 24.5
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 2.7e-09 67.4 289 27.3
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 6.0e-09 66.2 293 23.5
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 6.0e-09 66.2 284 25.7
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 1.0e-08 65.5 284 26.4
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 1.3e-08 65.1 291 25.4
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 1.3e-08 65.1 283 24.0
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 1.7e-08 64.7 42 73.8
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 1.7e-08 64.7 285 24.6
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 2.3e-08 64.3 347 24.8
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 2.3e-08 64.3 295 23.1
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 2.3e-08 64.3 277 27.4
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 3.0e-08 63.9 334 24.3
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 3.9e-08 63.5 287 23.3
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 3.9e-08 63.5 75 48.0
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 3.9e-08 63.5 280 24.3
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 5.1e-08 63.2 284 25.7
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 6.6e-08 62.8 289 25.3
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 1.1e-07 62.0 282 23.4
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 1.9e-07 61.2 283 24.7
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 1.9e-07 61.2 328 26.5
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 3.3e-07 60.5 285 24.2
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 3.3e-07 60.5 298 24.2
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 3.3e-07 60.5 282 23.4
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 4.3e-07 60.1 355 24.2
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 4.3e-07 60.1 282 23.0
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 7.3e-07 59.3 33 78.8
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 9.6e-07 58.9 270 25.2
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 1.2e-06 58.5 295 24.7
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 2.8e-06 57.4 287 23.7


User provided reference genes

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