Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 2.0e-104 382.5 196 100.0
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 1.4e-62 243.4 197 60.4
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 6.0e-61 238.0 197 60.4
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 9.5e-59 230.7 197 57.4
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 6.2e-58 228.0 200 57.5
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 2.4e-57 226.1 197 55.8
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.4e-56 222.2 197 57.4
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 5.8e-56 221.5 197 58.4
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 1.7e-55 219.9 179 62.6
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 2.9e-55 219.2 199 53.8
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 1.1e-54 217.2 200 54.0
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 1.1e-54 217.2 197 52.8
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 1.4e-54 216.9 200 54.5
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 2.4e-54 216.1 197 56.3
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 5.4e-54 214.9 203 52.2
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 9.2e-54 214.2 198 56.1
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 1.2e-53 213.8 200 52.5
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 2.1e-53 213.0 191 57.6
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 2.7e-53 212.6 197 52.8
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 2.7e-53 212.6 200 52.5
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 3.5e-53 212.2 197 52.8
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 3.5e-53 212.2 203 51.7
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 4.6e-53 211.8 199 54.8
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 4.6e-53 211.8 200 53.5
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 7.8e-53 211.1 197 52.3
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 2.3e-52 209.5 200 51.5
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 2.3e-52 209.5 200 51.5
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 3.0e-52 209.1 197 53.8
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 3.0e-52 209.1 197 52.3
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 5.1e-52 208.4 197 53.3
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 5.1e-52 208.4 198 55.1
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 6.6e-52 208.0 198 52.5
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.1e-51 207.2 196 54.1
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 1.1e-51 207.2 199 54.3
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 1.5e-51 206.8 205 50.7
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 1.5e-51 206.8 194 51.5
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 1.5e-51 206.8 200 53.5
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.6e-51 204.9 198 53.0
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.2e-50 203.8 198 52.5
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 2.1e-50 203.0 198 52.5
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 2.8e-50 202.6 198 50.0
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 4.7e-50 201.8 197 53.3
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 8.1e-50 201.1 200 50.5
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.4e-49 200.3 184 54.3
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 2.4e-49 199.5 202 53.5
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 2.4e-49 199.5 198 50.5
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 5.3e-49 198.4 202 53.0
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 6.9e-49 198.0 199 48.7
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 9.0e-49 197.6 189 49.7
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 2.0e-48 196.4 197 51.8
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.4e-48 195.7 184 52.2
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 9.9e-48 194.1 199 48.2
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 9.9e-48 194.1 198 51.0
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 1.3e-47 193.7 199 48.2
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 1.3e-47 193.7 197 49.2
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 1.7e-47 193.4 199 51.8
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 1.7e-47 193.4 200 48.5
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 4.9e-47 191.8 194 52.1
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 4.9e-47 191.8 185 51.4
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 3.2e-46 189.1 236 43.2
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 4.2e-46 188.7 197 51.3
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 7.1e-46 188.0 196 46.9
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 9.3e-46 187.6 198 50.5
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 1.2e-45 187.2 170 55.3
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 1.6e-45 186.8 187 49.7
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 2.1e-45 186.4 199 49.2
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 2.1e-45 186.4 184 53.8
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.5e-45 185.7 190 48.9
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 4.6e-45 185.3 197 48.2
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 1.0e-44 184.1 199 48.2
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.3e-44 183.0 185 50.3
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 3.9e-44 182.2 199 47.2
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 3.9e-44 182.2 199 47.7
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 5.1e-44 181.8 199 47.2
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 6.6e-44 181.4 199 48.2
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 6.6e-44 181.4 199 47.7
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 6.6e-44 181.4 199 47.2
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 2.5e-43 179.5 184 51.1
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 5.6e-43 178.3 206 47.6
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 7.3e-43 177.9 199 47.7
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 9.6e-43 177.6 135 65.9
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 2.8e-42 176.0 181 50.8
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 6.2e-42 174.9 199 46.7
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 6.2e-42 174.9 184 51.1
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 1.4e-41 173.7 154 54.5
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 1.4e-41 173.7 182 47.3
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 1.8e-41 173.3 181 48.6
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 2.4e-41 172.9 199 45.7
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 7.6e-40 167.9 157 54.1
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 7.6e-40 167.9 184 47.8
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 9.9e-40 167.5 186 47.3
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 4.2e-38 162.2 193 44.6
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 5.4e-38 161.8 156 52.6
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 5.4e-38 161.8 194 44.8
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 7.1e-38 161.4 234 40.2
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 9.6e-35 151.0 187 41.2
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 2.1e-34 149.8 176 48.3
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 3.7e-34 149.1 205 38.0
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 1.1e-33 147.5 156 46.2
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 5.3e-33 145.2 151 46.4
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 5.3e-33 145.2 186 45.7
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.5e-32 142.1 128 55.5
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 4.9e-31 138.7 155 45.2
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 1.2e-29 134.0 145 50.3
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.0e-28 131.0 139 49.6
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.6e-26 123.6 114 53.5
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 4.0e-25 119.0 145 40.7
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 3.4e-24 115.9 109 52.3
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 1.7e-23 113.6 145 42.1
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.2e-23 113.2 151 43.0
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 2.9e-23 112.8 102 50.0
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.5e-21 105.9 97 52.6
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 8.7e-20 101.3 84 60.7
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 4.3e-19 99.0 114 48.2
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.1e-17 92.8 87 54.0
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 2.6e-16 89.7 101 41.6
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 6.5e-15 85.1 84 51.2
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.9e-14 83.6 177 33.9
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.8e-12 77.0 185 25.9
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 1.8e-12 77.0 187 29.9
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 7.4e-11 71.6 70 48.6
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 2.2e-07 60.1 38 68.4


User provided reference genes

Program Settings