Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0804G092 Amborella trichopoda HOM05D007095 ORTHO05D008898 4.4e-77 291.2 146 100.0
ATR0300G001 Amborella trichopoda HOM05D007095 ORTHO05D000106 1.5e-37 159.8 96 82.3
ATR0320G029 Amborella trichopoda HOM05D007095 ORTHO05D008898 4.5e-37 158.3 96 80.2
ATR0594G129 Amborella trichopoda HOM05D007095 ORTHO05D008898 1.0e-36 157.1 96 81.2
ATR0626G085 Amborella trichopoda HOM05D007095 ORTHO05D008898 3.2e-35 152.1 96 77.1
ATR0564G468 Amborella trichopoda HOM05D007095 ORTHO05D008898 2.1e-34 149.4 96 76.0
ATR1127G160 Amborella trichopoda HOM05D007095 ORTHO05D008898 2.1e-34 149.4 96 76.0
ATR0752G235 Amborella trichopoda HOM05D007095 ORTHO05D008898 4.6e-34 148.3 139 59.7
ATR0122G027 Amborella trichopoda HOM05D007095 ORTHO05D008898 1.8e-33 146.4 145 58.6
ATR0629G103 Amborella trichopoda HOM05D007095 ORTHO05D008898 3.0e-33 145.6 96 74.0
ATR0804G046 Amborella trichopoda HOM05D007095 ORTHO05D000106 3.0e-33 145.6 96 75.0
ATR0629G047 Amborella trichopoda HOM05D000176 ORTHO05D008898 5.1e-33 144.8 96 76.0
ATR0759G046 Amborella trichopoda HOM05D007095 ORTHO05D008898 5.1e-33 144.8 96 74.0
ATR1134G114 Amborella trichopoda HOM05D000176 ORTHO05D008898 1.5e-32 143.3 96 71.9
ATR0326G005 Amborella trichopoda HOM05D000176 ORTHO05D000106 2.5e-32 142.5 115 64.3
ATR0594G218 Amborella trichopoda HOM05D007095 ORTHO05D000106 5.7e-32 141.4 108 67.6
ATR0598G009 Amborella trichopoda HOM05D007095 ORTHO05D008898 7.4e-32 141.0 95 73.7
ATR0661G500 Amborella trichopoda HOM05D007095 ORTHO05D008898 7.4e-32 141.0 96 71.9
ATR0629G053 Amborella trichopoda HOM05D007095 ORTHO05D008898 3.7e-31 138.7 96 69.8
ATR0624G111 Amborella trichopoda HOM05D007095 ORTHO05D008898 3.1e-30 135.6 96 67.7
ATR0568G225 Amborella trichopoda HOM05D000176 ORTHO05D008898 5.3e-30 134.8 114 62.3
ATR0594G014 Amborella trichopoda HOM05D007095 ORTHO05D008898 5.3e-30 134.8 96 66.7
ATR0705G136 Amborella trichopoda HOM05D007095 ORTHO05D008898 9.1e-30 134.0 80 78.8
ATR0743G249 Amborella trichopoda HOM05D007095 ORTHO05D008898 1.2e-29 133.7 96 71.9
ATR0749G019 Amborella trichopoda HOM05D007095 ORTHO05D008898 1.2e-29 133.7 96 68.8
ATR0762G003 Amborella trichopoda HOM05D007095 ORTHO05D008898 8.5e-28 127.5 90 65.6
ATR0071G035 Amborella trichopoda HOM05D007095 ORTHO05D008898 3.6e-26 122.1 83 72.3
ATR0594G075 Amborella trichopoda HOM05D007095 ORTHO05D008898 2.0e-24 116.3 81 69.1
ATR1134G084 Amborella trichopoda HOM05D007095 ORTHO05D008898 1.3e-23 113.6 86 68.6
ATR0144G006 Amborella trichopoda HOM05D007095 ORTHO05D008898 2.8e-23 112.5 66 81.8
ATR0712G034 Amborella trichopoda HOM05D007095 ORTHO05D008898 3.7e-23 112.1 86 61.6
ATR0609G083 Amborella trichopoda HOM05D007095 ORTHO05D000106 3.1e-22 109.0 68 73.5
ATR0980G006 Amborella trichopoda HOM05D007095 ORTHO05D008898 3.1e-22 109.0 138 47.1
ATR0796G166 Amborella trichopoda HOM05D007095 ORTHO05D008898 1.7e-20 103.2 134 45.5
ATR0564G431 Amborella trichopoda HOM05D007095 ORTHO05D008898 5.0e-20 101.7 67 73.1
ATR0598G252 Amborella trichopoda HOM05D007095 ORTHO05D008898 2.5e-19 99.4 107 52.3
ATR0030G010 Amborella trichopoda HOM05D007095 ORTHO05D008898 4.2e-19 98.6 91 59.3
ATR1132G074 Amborella trichopoda HOM05D007095 ORTHO05D008898 2.1e-18 96.3 79 58.2
ATR0681G174 Amborella trichopoda HOM05D007095 ORTHO05D000106 1.1e-16 90.5 55 76.4
ATR0752G037 Amborella trichopoda HOM05D007095 ORTHO05D008898 1.1e-16 90.5 68 66.2
ATR0317G020 Amborella trichopoda HOM05D007095 ORTHO05D008898 9.7e-16 87.4 57 77.2
ATR0044G038 Amborella trichopoda HOM05D007095 ORTHO05D008898 8.2e-15 84.3 63 69.8
ATR0019G002 Amborella trichopoda HOM05D007095 ORTHO05D008898 3.5e-13 79.0 96 49.0
ATR0602G201 Amborella trichopoda HOM05D000176 ORTHO05D008898 7.7e-13 77.8 41 82.9
ATR0620G075 Amborella trichopoda HOM05D007095 ORTHO05D008898 1.3e-12 77.0 59 69.5
ATR0171G045 Amborella trichopoda HOM05D007095 ORTHO05D008898 1.7e-12 76.6 41 78.0
ATR0691G004 Amborella trichopoda HOM05D007095 ORTHO05D000106 2.2e-12 76.3 46 78.3
ATR0314G038 Amborella trichopoda HOM05D000176 ORTHO05D008898 1.5e-11 73.6 53 62.3
ATR1133G058 Amborella trichopoda HOM05D000176 ORTHO05D000106 1.9e-11 73.2 96 38.5
arahy.Tifrunner.gnm1.ann1.PINR01 Arachis hypogaea HOM05D000176 ORTHO05D000106 2.5e-11 72.8 96 46.9
arahy.Tifrunner.gnm1.ann1.6TXF5J Arachis hypogaea HOM05D000176 ORTHO05D000106 4.2e-11 72.0 96 45.8
ATR0012G047 Amborella trichopoda HOM05D000176 ORTHO05D000106 1.2e-10 70.5 90 38.9
Ca_23329_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.2e-10 70.5 96 45.8
ATR0620G119 Amborella trichopoda HOM05D000176 ORTHO05D000106 1.6e-10 70.1 95 36.8
ATR0605G002 Amborella trichopoda HOM05D000176 ORTHO05D000106 2.1e-10 69.7 96 36.5
ATR0026G004 Amborella trichopoda HOM05D007095 ORTHO05D008898 3.6e-10 68.9 41 75.6
ATR0782G156 Amborella trichopoda HOM05D007095 ORTHO05D008898 4.7e-10 68.6 47 72.3
Lj3g0023710 Lotus japonicus HOM05D000176 ORTHO05D000106 1.0e-09 67.4 96 44.8
Aa31sc83G70 Aethionema arabicum HOM05D000176 ORTHO05D000106 1.8e-09 66.6 94 43.6
CANSAT56G1843 Cannabis sativa HOM05D000176 ORTHO05D000106 2.3e-09 66.2 88 42.0
Psat4g187840 Pisum sativum HOM05D000176 ORTHO05D000106 3.0e-09 65.9 96 44.8
ATR0332G037 Amborella trichopoda HOM05D000176 ORTHO05D000106 5.2e-09 65.1 97 36.1
ATR0193G047 Amborella trichopoda HOM05D007095 ORTHO05D008898 6.7e-09 64.7 42 76.2
Prupe.3G047800 Prunus persica HOM05D000176 ORTHO05D000106 2.6e-08 62.8 88 40.9
AT2G04865 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 3.3e-08 62.4 98 38.8
CsaV3_5G039840 Cucumis sativus L. HOM05D000176 ORTHO05D000106 3.3e-08 62.4 90 38.9
FvH4_3g28611 Fragaria vesca HOM05D000176 ORTHO05D000106 4.4e-08 62.0 90 43.3
GSVIVG01006780001 Vitis vinifera HOM05D000176 ORTHO05D000106 4.4e-08 62.0 98 38.8
Duzib211G0089 Durio zibethinus HOM05D000176 ORTHO05D000106 7.5e-08 61.2 98 38.8
Thhalv10002429m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 7.5e-08 61.2 98 36.7
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 7.5e-08 61.2 88 39.8
ClCG09G020530 Citrullus lanatus HOM05D000176 ORTHO05D000106 1.3e-07 60.5 91 42.9
CsaV3_5G025870 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.3e-07 60.5 91 42.9
Eucgr.A01958 Eucalyptus grandis HOM05D000176 ORTHO05D000106 1.3e-07 60.5 98 37.8
Prupe.4G252400 Prunus persica HOM05D000176 ORTHO05D000106 1.3e-07 60.5 91 44.0
QL05p010466 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-07 60.5 96 40.6
MELO3C002881.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.7e-07 60.1 91 42.9
FvH4_6g37771 Fragaria vesca HOM05D000176 ORTHO05D000106 1.7e-07 60.1 99 39.4
RcHm_v2.0_Chr2g0150841 Rosa chinensis HOM05D000176 ORTHO05D000106 1.7e-07 60.1 99 39.4
Hund07743 Selenicereus undatus HOM05D000176 ORTHO05D000106 1.7e-07 60.1 98 37.8
ATR1100G024 Amborella trichopoda HOM05D007095 ORTHO05D008898 2.2e-07 59.7 46 58.7
Ca_14624_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 2.2e-07 59.7 99 39.4
Lalb_Chr15g0080531 Lupinus albus HOM05D000176 ORTHO05D000106 2.2e-07 59.7 98 37.8
Lalb_Chr20g0114151 Lupinus albus HOM05D000176 ORTHO05D000106 2.2e-07 59.7 99 40.4
MD17G1142300 Malus domestica HOM05D000176 ORTHO05D000106 2.2e-07 59.7 99 40.4
Sed0026480 Sechium edule HOM05D000176 ORTHO05D000106 2.2e-07 59.7 91 42.9
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 2.8e-07 59.3 98 36.7
Ciclev10014335m.g Citrus clementina HOM05D000176 ORTHO05D000106 2.8e-07 59.3 98 37.8
Lj3C925T6 Lonicera japonica HOM05D000176 ORTHO05D000106 2.8e-07 59.3 98 37.8
MD09G1156100 Malus domestica HOM05D000176 ORTHO05D000106 2.8e-07 59.3 99 39.4
MD17G1142200 Malus domestica HOM05D000176 ORTHO05D000106 2.8e-07 59.3 99 41.4
THA.LOC104823099 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 2.8e-07 59.3 94 40.4
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 2.8e-07 59.3 98 35.7
MELO3C033541.2 Cucumis melo HOM05D000176 ORTHO05D000106 3.7e-07 58.9 90 38.9
Gorai.001G193000 Gossypium raimondii HOM05D000176 ORTHO05D000106 3.7e-07 58.9 98 38.8
ATR0320G023 Amborella trichopoda HOM05D007095 ORTHO05D000106 4.8e-07 58.5 41 68.3
Thhalv10000135m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 4.8e-07 58.5 94 38.3
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 4.8e-07 58.5 88 40.9
RcHm_v2.0_Chr5g0052481 Rosa chinensis HOM05D000176 ORTHO05D000106 4.8e-07 58.5 90 41.1
TPR.G1842 Trifolium pratense HOM05D000176 ORTHO05D000106 4.8e-07 58.5 99 39.4
Aa31sc575G20 Aethionema arabicum HOM05D000176 ORTHO05D000106 6.3e-07 58.2 98 36.7
Ah.16g107440 Amaranthus hybridus HOM05D000176 ORTHO05D000106 6.3e-07 58.2 98 36.7
AUR62038386 Chenopodium quinoa HOM05D000176 ORTHO05D000106 6.3e-07 58.2 98 35.7
AUR62038389 Chenopodium quinoa HOM05D000176 ORTHO05D000106 6.3e-07 58.2 98 35.7
Ciclev10025397m.g Citrus clementina HOM05D000176 ORTHO05D000106 6.3e-07 58.2 102 39.2
Duzib138G0102 Durio zibethinus HOM05D000176 ORTHO05D000106 6.3e-07 58.2 98 36.7
ATR0580G141 Amborella trichopoda HOM05D000176 ORTHO05D008898 8.2e-07 57.8 83 37.3
ATR0618G361 Amborella trichopoda HOM05D007095 ORTHO05D008898 8.2e-07 57.8 49 63.3
ATR0706G186 Amborella trichopoda HOM05D000176 ORTHO05D000106 8.2e-07 57.8 96 31.2
ATR1100G019 Amborella trichopoda HOM05D009392 ORTHO05D012298 8.2e-07 57.8 87 34.5
BcaB06g28031 Brassica carinata HOM05D000176 ORTHO05D000106 8.2e-07 57.8 94 40.4
PGR042G1331 Punica granatum HOM05D000176 ORTHO05D000106 8.2e-07 57.8 98 36.7
Sp1g16000 Schrenkiella parvula HOM05D000176 ORTHO05D000106 8.2e-07 57.8 91 41.8
ATR1128G121 Amborella trichopoda HOM05D007095 ORTHO05D008898 1.1e-06 57.4 46 63.0
AL3G42490 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.1e-06 57.4 98 35.7
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 1.1e-06 57.4 99 39.4
MELO3C027326.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.1e-06 57.4 90 37.8
MELO3C027673.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.1e-06 57.4 80 40.0
Os02g0592600 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 1.1e-06 57.4 94 33.0
Atru.chr6.3553_Atru.chr6.3554 Acer truncatum HOM05D000176 ORTHO05D000106 1.4e-06 57.0 98 35.7
ATR0665G604 Amborella trichopoda HOM05D000176 ORTHO05D000106 1.4e-06 57.0 97 34.0
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 1.4e-06 57.0 98 35.7
CSS0045164 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.4e-06 57.0 98 35.7
Lj6g0005713 Lotus japonicus HOM05D000176 ORTHO05D000106 1.4e-06 57.0 99 39.4
Os01g0531200 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 1.4e-06 57.0 94 33.0
Os01g0738500 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 1.4e-06 57.0 94 33.0
Prupe.3G169000 Prunus persica HOM05D000176 ORTHO05D000106 1.4e-06 57.0 99 39.4
QL08p043592 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-06 57.0 99 39.4
A03p44500 Brassica napus HOM05D000176 ORTHO05D000106 1.8e-06 56.6 98 37.8
C03p55310 Brassica napus HOM05D000176 ORTHO05D000106 1.8e-06 56.6 98 37.8
BolC3t17803H Brassica oleracea HOM05D000176 ORTHO05D000106 1.8e-06 56.6 98 37.8
BraA03t13583Z Brassica rapa HOM05D000176 ORTHO05D000106 1.8e-06 56.6 98 37.8
CSS0002500 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-06 56.6 98 37.8
CSS0014815 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-06 56.6 98 37.8
CARHR102890 Cardamine hirsuta HOM05D000176 ORTHO05D000106 1.8e-06 56.6 98 35.7
VMungo0540G2186 Vigna mungo HOM05D000176 ORTHO05D000106 1.8e-06 56.6 99 39.4
Atru.chr6.3350 Acer truncatum HOM05D000176 ORTHO05D000106 2.4e-06 56.2 98 36.7
ATR0980G016 Amborella trichopoda HOM05D000176 ORTHO05D000106 2.4e-06 56.2 96 33.3
Dinv18200 Davidia involucrata HOM05D000176 ORTHO05D000106 2.4e-06 56.2 98 35.7
FvH4_6g33711 Fragaria vesca HOM05D000176 ORTHO05D000106 2.4e-06 56.2 88 39.8
ATR0605G317 Amborella trichopoda HOM05D007095 ORTHO05D008898 3.1e-06 55.8 38 71.1
EL10As19g24186 Beta vulgaris HOM05D000176 ORTHO05D000106 3.1e-06 55.8 98 35.7
A06p13970 Brassica napus HOM05D000176 ORTHO05D000106 3.1e-06 55.8 92 40.2
BraA06t24537Z Brassica rapa HOM05D000176 ORTHO05D000106 3.1e-06 55.8 92 40.2
Sp4g03990 Schrenkiella parvula HOM05D000176 ORTHO05D000106 3.1e-06 55.8 94 38.3
arahy.Tifrunner.gnm1.ann1.ZG7XLL Arachis hypogaea HOM05D000176 ORTHO05D000106 4.1e-06 55.5 99 38.4
AUR62022514 Chenopodium quinoa HOM05D000176 ORTHO05D000106 4.1e-06 55.5 98 36.7
BcaB07g34015 Brassica carinata HOM05D000176 ORTHO05D000106 5.3e-06 55.1 92 39.1
C05p16290 Brassica napus HOM05D000176 ORTHO05D000106 5.3e-06 55.1 92 39.1
BolC5t30331H Brassica oleracea HOM05D000176 ORTHO05D000106 5.3e-06 55.1 92 39.1
CsaV3_6G015670 Cucumis sativus L. HOM05D000176 ORTHO05D000106 5.3e-06 55.1 99 38.4
Thhalv10007522m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 5.3e-06 55.1 91 40.7
AT2G25010 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 7.0e-06 54.7 94 38.3
Os07g0507600 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 7.0e-06 54.7 93 39.8
THA.LOC104799018 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 7.0e-06 54.7 91 40.7
Aa31LG11G4340 Aethionema arabicum HOM05D000176 ORTHO05D000106 9.1e-06 54.3 91 39.6
BcaC02g08378 Brassica carinata HOM05D000176 ORTHO05D000106 9.1e-06 54.3 94 38.3
C04p55010 Brassica napus HOM05D000176 ORTHO05D000106 9.1e-06 54.3 94 38.3
BolC4t27041H Brassica oleracea HOM05D000176 ORTHO05D000106 9.1e-06 54.3 93 38.7
Psat5g183880 Pisum sativum HOM05D000176 ORTHO05D000106 9.1e-06 54.3 98 34.7
Sed0012746 Sechium edule HOM05D000176 ORTHO05D000106 9.1e-06 54.3 99 38.4
GSVIVG01026490001 Vitis vinifera HOM05D000176 ORTHO05D000106 9.1e-06 54.3 96 36.5


User provided reference genes

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