Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 3.8e-55 218.0 116 100.0
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.5e-14 82.4 115 47.0
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 5.5e-14 81.3 73 57.5
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.2e-14 80.9 114 46.5
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 5.2e-12 74.7 67 58.2
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 6.8e-12 74.3 119 45.4
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 6.8e-12 74.3 120 43.3
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 1.2e-11 73.6 89 46.1
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.5e-11 73.2 109 44.0
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.5e-11 73.2 109 44.0
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.5e-11 73.2 91 48.4
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 2.0e-11 72.8 113 40.7
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 4.4e-11 71.6 115 43.5
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 4.4e-11 71.6 82 50.0
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 4.4e-11 71.6 47 68.1
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 4.4e-11 71.6 75 53.3
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 4.4e-11 71.6 49 69.4
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 4.4e-11 71.6 55 60.0
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 4.4e-11 71.6 80 46.2
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 5.7e-11 71.2 102 42.2
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 5.7e-11 71.2 113 40.7
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 5.7e-11 71.2 109 43.1
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 5.7e-11 71.2 50 66.0
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 9.8e-11 70.5 69 53.6
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 9.8e-11 70.5 80 51.2
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 1.3e-10 70.1 112 42.9
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.3e-10 70.1 80 48.8
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 2.2e-10 69.3 47 68.1
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 2.8e-10 68.9 112 42.9
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 2.8e-10 68.9 51 62.7
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 3.7e-10 68.6 45 68.9
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 3.7e-10 68.6 115 39.1
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 3.7e-10 68.6 106 42.5
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 4.8e-10 68.2 118 39.0
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 6.3e-10 67.8 112 42.9
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 1.4e-09 66.6 112 42.0
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 1.4e-09 66.6 69 52.2
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 2.4e-09 65.9 45 64.4
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 3.1e-09 65.5 83 45.8
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 4.1e-09 65.1 68 51.5
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 5.4e-09 64.7 98 44.9
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 5.4e-09 64.7 103 42.7
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 5.4e-09 64.7 103 42.7
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 5.4e-09 64.7 98 44.9
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 7.0e-09 64.3 72 50.0
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 9.1e-09 63.9 119 37.8
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 9.1e-09 63.9 68 52.9
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 1.2e-08 63.5 68 54.4
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 1.6e-08 63.2 51 62.7
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 1.6e-08 63.2 51 62.7
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 1.6e-08 63.2 50 60.0
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 1.6e-08 63.2 46 65.2
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.7e-08 62.4 94 39.4
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 3.5e-08 62.0 112 40.2
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 4.5e-08 61.6 50 68.0
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 4.5e-08 61.6 88 39.8
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 4.5e-08 61.6 118 40.7
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 4.5e-08 61.6 61 47.5
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 4.5e-08 61.6 51 52.9
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 5.9e-08 61.2 86 44.2
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 5.9e-08 61.2 42 66.7
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 5.9e-08 61.2 112 40.2
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 7.7e-08 60.8 63 54.0
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 1.0e-07 60.5 100 42.0
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.0e-07 60.5 103 37.9
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 1.3e-07 60.1 51 60.8
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 1.3e-07 60.1 46 65.2
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 1.3e-07 60.1 91 41.8
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.3e-07 60.1 78 46.2
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 1.7e-07 59.7 123 37.4
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 2.3e-07 59.3 72 48.6
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 2.3e-07 59.3 113 41.6
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 2.9e-07 58.9 92 45.7
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 2.9e-07 58.9 92 45.7
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 2.9e-07 58.9 101 40.6
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 2.9e-07 58.9 72 47.2
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 2.9e-07 58.9 44 65.9
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 5.0e-07 58.2 100 40.0
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 5.0e-07 58.2 49 63.3
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 5.0e-07 58.2 61 45.9
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 5.0e-07 58.2 107 37.4
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.0e-07 58.2 35 71.4
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.0e-07 58.2 35 71.4
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 5.0e-07 58.2 35 71.4
Rhsim13G0163300 Rhododendron simsii HOM05D007156 ORTHO05D003871 5.0e-07 58.2 111 40.5
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 6.6e-07 57.8 107 36.4
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 6.6e-07 57.8 107 36.4
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 8.6e-07 57.4 118 36.4
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 8.6e-07 57.4 50 54.0
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 8.6e-07 57.4 40 65.0
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 8.6e-07 57.4 79 46.8
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.1e-06 57.0 123 35.8
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 1.1e-06 57.0 114 43.0
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.1e-06 57.0 94 39.4
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 1.5e-06 56.6 104 39.4
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.5e-06 56.6 42 61.9
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.9e-06 56.2 41 63.4
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 1.9e-06 56.2 103 37.9
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 1.9e-06 56.2 47 57.4
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 1.9e-06 56.2 58 53.4
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 1.9e-06 56.2 80 48.8
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 1.9e-06 56.2 42 64.3
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.9e-06 56.2 69 42.0
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 2.5e-06 55.8 57 50.9
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 2.5e-06 55.8 34 73.5
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 2.5e-06 55.8 46 65.2
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 3.3e-06 55.5 54 57.4
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 3.3e-06 55.5 45 62.2
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 3.3e-06 55.5 56 44.6
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 3.3e-06 55.5 40 62.5
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 4.2e-06 55.1 81 45.7
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 4.2e-06 55.1 105 37.1
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 4.2e-06 55.1 72 47.2
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 4.2e-06 55.1 96 40.6
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 4.2e-06 55.1 40 65.0
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 4.2e-06 55.1 66 51.5
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 4.2e-06 55.1 97 39.2
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 4.2e-06 55.1 84 38.1
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 4.2e-06 55.1 51 52.9
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 5.5e-06 54.7 64 46.9
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 5.5e-06 54.7 33 75.8
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 5.5e-06 54.7 34 73.5
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 5.5e-06 54.7 45 57.8
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 7.2e-06 54.3 76 40.8
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 7.2e-06 54.3 81 40.7
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 7.2e-06 54.3 122 37.7
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 9.5e-06 53.9 77 40.3


User provided reference genes

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