Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0804G033 Amborella trichopoda HOM05D048286 ORTHO05D019568 3.7e-55 218.4 147 100.0
ATR0804G055 Amborella trichopoda HOM05D000001 ORTHO05D019568 6.6e-12 74.7 43 86.0
FAN24G0008 Fragaria x ananassa HOM05D000001 ORTHO05D009488 8.6e-12 74.3 139 53.2
FAN20G1831 Fragaria x ananassa HOM05D000001 ORTHO05D009488 1.1e-11 73.9 139 53.2
FAN15G0208 Fragaria x ananassa HOM05D000001 ORTHO05D009488 2.5e-11 72.8 139 51.8
ATR0772G222 Amborella trichopoda HOM05D048286 ORTHO05D066086 2.3e-09 66.2 35 88.6
FvH4_2g21860 Fragaria vesca HOM05D000001 ORTHO05D009488 4.0e-09 65.5 54 64.8
Psat5g110800 Pisum sativum HOM05D000001 ORTHO05D000003 6.8e-09 64.7 137 30.7
Ca_20018_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009488 1.5e-08 63.5 138 49.3
DCAR_017461 Daucus carota HOM05D000001 ORTHO05D009488 1.5e-08 63.5 48 64.6
RcHm_v2.0_Chr6g0288731 Rosa chinensis HOM05D000001 ORTHO05D009488 1.5e-08 63.5 59 57.6
DCAR_016723 Daucus carota HOM05D000001 ORTHO05D009488 2.6e-08 62.8 48 64.6
TPR.G34501 Trifolium pratense HOM05D000001 ORTHO05D000003 3.4e-08 62.4 137 29.9
TWI18G1218 Tripterygium wilfordii HOM05D000001 ORTHO05D009488 3.4e-08 62.4 47 63.8
COL.COLO4_05607 Corchorus olitorius HOM05D000001 ORTHO05D009488 4.4e-08 62.0 58 56.9
TAR362G0534 Trochodendron aralioides HOM05D000001 ORTHO05D009488 4.4e-08 62.0 47 63.8
Manes.13G032100 Manihot esculenta HOM05D000001 ORTHO05D009488 7.5e-08 61.2 54 59.3
HanXRQChr02g0057601 Helianthus annuus HOM05D000001 ORTHO05D009857 9.8e-08 60.8 120 32.5
Dinv41176 Davidia involucrata HOM05D000001 ORTHO05D000003 1.7e-07 60.1 67 47.8
Prupe.8G226200 Prunus persica HOM05D000001 ORTHO05D009488 2.2e-07 59.7 54 55.6
CANSAT80G0131 Cannabis sativa HOM05D000001 ORTHO05D009488 2.9e-07 59.3 54 55.6
Nitab4.5_0001509g0070 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.9e-07 59.3 122 30.3
VMungo1383G3679 Vigna mungo HOM05D000001 ORTHO05D000003 2.9e-07 59.3 137 29.2
AUR62020742 Chenopodium quinoa HOM05D000001 ORTHO05D000003 3.7e-07 58.9 129 28.7
PSO339G4224 Papaver somniferum HOM05D000001 ORTHO05D009574 3.7e-07 58.9 128 29.7
CAN.G206.222 Capsicum annuum HOM05D000001 ORTHO05D009488 6.4e-07 58.2 47 55.3
THA.LOC104815852 Tarenaya hassleriana HOM05D000978 ORTHO05D009488 6.4e-07 58.2 54 55.6
Gohir.D09G039980 Gossypium hirsutum HOM05D000001 ORTHO05D010013 8.3e-07 57.8 60 45.0
PSO384G1554 Papaver somniferum HOM05D000001 ORTHO05D009574 8.3e-07 57.8 128 28.9
Thecc.01G261400 Theobroma cacao HOM05D000001 ORTHO05D009488 8.3e-07 57.8 54 55.6
TAR636G3465 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.1e-06 57.4 132 28.8
Carub.0001s0549 Capsella rubella HOM05D000001 ORTHO05D009488 1.4e-06 57.0 54 50.0
SHI09854 Sapria himalayana HOM05D000001 ORTHO05D009488 1.4e-06 57.0 54 50.0
CiPaw.05G140100 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.9e-06 56.6 132 28.8
Dinv43534 Davidia involucrata HOM05D000001 ORTHO05D000003 1.9e-06 56.6 128 26.6
Os01g0814300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 1.9e-06 56.6 59 47.5
Sed0020051 Sechium edule HOM05D000001 ORTHO05D000003 1.9e-06 56.6 131 28.2
GSVIVG01010647001 Vitis vinifera HOM05D000001 ORTHO05D010013 1.9e-06 56.6 129 29.5
Zm00001eb149920 Zea mays HOM05D000001 ORTHO05D000003 1.9e-06 56.6 63 46.0
MSTRG.26119 Avicennia marina HOM05D000001 ORTHO05D000003 2.4e-06 56.2 124 28.2
EL10Ac2g03613 Beta vulgaris HOM05D000001 ORTHO05D000003 2.4e-06 56.2 126 28.6
MBI12_g25034_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 2.4e-06 56.2 133 27.8
Aqoxy5G02691 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 3.2e-06 55.8 142 27.5
CSS0021472 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 3.2e-06 55.8 49 51.0
CANSAT54G2148 Cannabis sativa HOM05D000001 ORTHO05D000003 3.2e-06 55.8 128 28.1
Duzib138G1534 Durio zibethinus HOM05D000001 ORTHO05D009488 3.2e-06 55.8 53 56.6
Rhsim13G0222900 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.2e-06 55.8 47 53.2
Sopen02g033490 Solanum pennellii HOM05D000001 ORTHO05D009488 3.2e-06 55.8 47 53.2
BcaC07g42080 Brassica carinata HOM05D000001 ORTHO05D009488 4.1e-06 55.5 54 51.9
Aqoxy6G01098 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 5.4e-06 55.1 136 27.9
CAN.G128.14 Capsicum annuum HOM05D000001 ORTHO05D000003 5.4e-06 55.1 128 28.9
Cpa.g.sc50.39 Carica papaya HOM05D000001 ORTHO05D009488 5.4e-06 55.1 44 61.4
Thhalv10022616m.g Eutrema salsugineum HOM05D000001 ORTHO05D009488 5.4e-06 55.1 52 51.9
Gohir.A10G237650 Gossypium hirsutum HOM05D000001 ORTHO05D000003 5.4e-06 55.1 69 43.5
MD07G1076300 Malus domestica HOM05D000001 ORTHO05D000003 5.4e-06 55.1 129 27.9
Nn2g13801 Nelumbo nucifera HOM05D000001 ORTHO05D000003 5.4e-06 55.1 132 45.5
AL4G24550 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 7.0e-06 54.7 127 49.6
Cc09_g04440 Coffea canephora HOM05D000001 ORTHO05D009488 7.0e-06 54.7 53 52.8
MBI17_g36841_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009488 7.0e-06 54.7 47 57.4
PSO339G0363 Papaver somniferum HOM05D000001 ORTHO05D009488 7.0e-06 54.7 54 51.9
PSO801G0691 Papaver somniferum HOM05D000001 ORTHO05D009488 7.0e-06 54.7 54 51.9
CDE01G0246 Ceratophyllum demersum HOM05D000008 ORTHO05D000005 9.2e-06 54.3 134 32.1
Haze_23113 Corylus avellana HOM05D000001 ORTHO05D000003 9.2e-06 54.3 57 49.1
Dinv42116 Davidia involucrata HOM05D000001 ORTHO05D009488 9.2e-06 54.3 38 65.8
MBI05_g35015_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D022878 9.2e-06 54.3 64 46.9
PSO017G5880 Papaver somniferum HOM05D000001 ORTHO05D000003 9.2e-06 54.3 127 28.3
Prupe.2G097100 Prunus persica HOM05D000001 ORTHO05D000003 9.2e-06 54.3 129 28.7
TAR627G0816 Trochodendron aralioides HOM05D000001 ORTHO05D011563 9.2e-06 54.3 132 30.3


User provided reference genes

Program Settings