Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 6.8e-67 257.3 140 100.0
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 3.3e-53 211.8 131 89.3
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 9.6e-29 130.6 130 56.2
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 9.9e-26 120.6 129 51.9
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 2.2e-25 119.4 131 52.7
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 1.1e-24 117.1 130 52.3
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 3.2e-24 115.5 130 50.0
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 5.5e-24 114.8 130 49.2
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 7.1e-24 114.4 130 47.7
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.2e-23 113.6 130 47.7
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.2e-23 113.6 130 51.5
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.6e-23 113.2 131 46.6
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.1e-23 112.8 131 48.1
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 7.9e-23 110.9 130 46.2
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 1.3e-22 110.2 130 48.5
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 1.3e-22 110.2 131 44.3
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 1.8e-22 109.8 131 44.3
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 2.3e-22 109.4 130 46.2
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 3.0e-22 109.0 132 47.0
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 3.9e-22 108.6 131 47.3
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 6.7e-22 107.8 130 43.8
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 1.1e-21 107.1 112 49.1
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.5e-21 106.7 130 45.4
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.9e-21 106.3 130 46.9
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 2.5e-21 105.9 130 45.4
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 4.3e-21 105.1 130 45.4
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 5.6e-21 104.8 130 48.5
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 7.4e-21 104.4 130 43.8
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 7.4e-21 104.4 130 43.8
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 4.8e-20 101.7 130 44.6
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 4.8e-20 101.7 135 47.4
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 6.2e-20 101.3 130 44.6
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 6.2e-20 101.3 131 43.5
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 6.2e-20 101.3 130 45.4
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 8.1e-20 100.9 130 47.7
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.1e-20 100.9 130 45.4
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 1.1e-19 100.5 130 46.2
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 1.1e-19 100.5 130 43.8
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 1.4e-19 100.1 131 43.5
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 1.4e-19 100.1 130 46.2
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.4e-19 100.1 130 44.6
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.4e-19 99.4 139 43.2
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 3.1e-19 99.0 111 47.7
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 3.1e-19 99.0 130 43.1
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 3.1e-19 99.0 130 45.4
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 4.0e-19 98.6 130 45.4
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 4.0e-19 98.6 130 44.6
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 5.3e-19 98.2 130 43.8
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 6.9e-19 97.8 130 44.6
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 6.9e-19 97.8 131 39.7
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 9.0e-19 97.4 137 43.8
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.0e-19 97.4 137 43.8
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.0e-19 97.4 137 43.8
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.2e-18 97.1 130 40.8
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.2e-18 97.1 130 40.8
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 1.2e-18 97.1 130 40.0
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.5e-18 96.7 130 40.8
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 1.5e-18 96.7 130 44.6
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.5e-18 96.7 137 42.3
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 1.5e-18 96.7 130 44.6
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.5e-18 96.7 127 41.7
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 3.4e-18 95.5 131 41.2
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 4.5e-18 95.1 130 42.3
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.5e-18 95.1 130 41.5
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 4.5e-18 95.1 130 43.8
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 7.6e-18 94.4 130 41.5
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.0e-17 94.0 118 47.5
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 1.0e-17 94.0 130 42.3
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.3e-17 93.6 130 40.0
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.7e-17 93.2 130 41.5
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 2.2e-17 92.8 130 40.0
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 2.2e-17 92.8 130 40.0
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 2.2e-17 92.8 130 40.0
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 2.9e-17 92.4 130 40.0
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 2.9e-17 92.4 129 40.3
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 3.8e-17 92.0 130 41.5
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 3.8e-17 92.0 137 41.6
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 3.8e-17 92.0 130 40.0
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 4.9e-17 91.7 130 41.5
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 6.5e-17 91.3 130 40.8
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 6.5e-17 91.3 130 40.8
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 6.5e-17 91.3 130 40.8
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 6.5e-17 91.3 112 46.4
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 6.5e-17 91.3 131 39.7
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 6.5e-17 91.3 137 39.4
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 8.4e-17 90.9 130 40.0
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 1.4e-16 90.1 130 39.2
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.4e-16 90.1 130 40.0
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.4e-16 90.1 127 38.6
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 1.9e-16 89.7 131 35.9
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 2.5e-16 89.4 130 39.2
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 2.5e-16 89.4 130 39.2
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 3.2e-16 89.0 130 38.5
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.2e-16 89.0 130 41.5
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 9.3e-16 87.4 137 40.9
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.2e-15 87.0 130 39.2
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.2e-15 87.0 83 55.4
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 1.6e-15 86.7 137 39.4
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 2.1e-15 86.3 130 42.3
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 2.1e-15 86.3 130 44.6
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 2.1e-15 86.3 130 40.0
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 4.6e-15 85.1 137 38.0
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 6.0e-15 84.7 130 40.0
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 7.9e-15 84.3 121 45.5
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.9e-15 84.3 121 44.6
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.3e-14 83.6 115 47.0
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.3e-14 83.6 127 40.2
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.3e-14 83.6 130 39.2
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.3e-14 82.8 121 44.6
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.3e-14 82.8 130 39.2
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 1.5e-13 80.1 92 48.9
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 1.5e-13 80.1 130 35.4
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.9e-13 79.7 130 39.2
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 1.9e-13 79.7 130 36.9
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 9.6e-13 77.4 127 37.0
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.8e-12 75.9 83 49.4
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 4.8e-12 75.1 128 32.8
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 1.8e-11 73.2 100 44.0
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 3.1e-11 72.4 130 33.8
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 9.0e-11 70.9 68 52.9
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 9.0e-11 70.9 130 30.8
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 9.0e-11 70.9 113 38.1
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 5.9e-10 68.2 130 35.4
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 5.0e-09 65.1 130 32.3
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 7.2e-08 61.2 65 47.7
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 7.2e-08 61.2 97 38.1
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.2e-07 60.5 75 44.0
C02p16100 Brassica napus HOM05D004224 ORTHO05D016135 3.0e-06 55.8 57 50.9
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.7e-06 54.3 92 37.0


User provided reference genes

Program Settings