Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 8.2e-67 256.9 129 100.0
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 4.0e-29 131.7 79 74.7
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 6.8e-29 131.0 79 75.9
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 1.5e-28 129.8 79 74.7
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 5.7e-28 127.9 79 74.7
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 7.5e-28 127.5 79 73.4
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 7.5e-28 127.5 79 75.9
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 7.5e-28 127.5 79 74.7
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 7.5e-28 127.5 79 70.9
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 9.8e-28 127.1 79 72.2
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.3e-27 126.7 79 70.9
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 1.3e-27 126.7 79 70.9
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 1.7e-27 126.3 79 70.9
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 1.7e-27 126.3 79 72.2
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 3.7e-27 125.2 79 72.2
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 3.7e-27 125.2 79 72.2
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 4.9e-27 124.8 78 71.8
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 6.3e-27 124.4 79 72.2
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 6.3e-27 124.4 79 70.9
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.1e-26 123.6 79 72.2
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 2.4e-26 122.5 79 67.1
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 3.1e-26 122.1 79 72.2
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 3.1e-26 122.1 79 69.6
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 4.1e-26 121.7 79 69.6
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 5.4e-26 121.3 79 69.6
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 7.0e-26 120.9 79 69.6
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 9.2e-26 120.6 79 69.6
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 9.2e-26 120.6 79 69.6
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 9.2e-26 120.6 79 69.6
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 9.2e-26 120.6 79 69.6
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 1.6e-25 119.8 79 68.4
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 1.6e-25 119.8 79 67.1
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 2.0e-25 119.4 79 68.4
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 2.0e-25 119.4 79 68.4
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 2.7e-25 119.0 79 68.4
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 2.7e-25 119.0 79 68.4
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 3.5e-25 118.6 79 68.4
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 3.5e-25 118.6 79 67.1
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 3.5e-25 118.6 79 67.1
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 4.5e-25 118.2 79 70.9
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 4.5e-25 118.2 80 68.8
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 5.9e-25 117.9 79 69.6
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 5.9e-25 117.9 79 72.2
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 5.9e-25 117.9 79 72.2
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 5.9e-25 117.9 79 72.2
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 5.9e-25 117.9 79 72.2
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 5.9e-25 117.9 79 68.4
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 7.8e-25 117.5 79 69.6
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 7.8e-25 117.5 79 69.6
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 1.0e-24 117.1 79 70.9
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 1.0e-24 117.1 79 70.9
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 1.3e-24 116.7 80 70.0
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 1.7e-24 116.3 79 67.1
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.7e-24 116.3 78 65.4
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 1.7e-24 116.3 79 65.8
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 3.8e-24 115.2 79 65.8
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.8e-24 115.2 79 70.9
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 5.0e-24 114.8 79 65.8
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 8.6e-24 114.0 79 68.4
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 1.1e-23 113.6 79 62.0
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 1.5e-23 113.2 79 64.6
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 1.9e-23 112.8 79 64.6
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 1.9e-23 112.8 79 64.6
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 2.5e-23 112.5 79 60.8
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 3.3e-23 112.1 79 63.3
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 3.3e-23 112.1 79 64.6
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 4.3e-23 111.7 78 61.5
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 1.6e-22 109.8 80 65.0
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 2.8e-22 109.0 79 64.6
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 3.6e-22 108.6 79 63.3
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 4.7e-22 108.2 79 63.3
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 6.1e-22 107.8 79 62.0
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 1.0e-21 107.1 79 60.8
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 1.4e-21 106.7 79 60.8
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 1.8e-21 106.3 79 58.2
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 2.3e-21 105.9 79 62.0
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 2.3e-21 105.9 79 62.0
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 3.0e-21 105.5 79 62.0
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 6.8e-21 104.4 79 60.8
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 8.9e-21 104.0 79 60.8
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 1.5e-20 103.2 79 59.5
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 1.5e-20 103.2 79 59.5
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 1.5e-20 103.2 79 59.5
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 1.5e-20 103.2 79 59.5
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 2.0e-20 102.8 77 59.7
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 3.4e-20 102.1 79 60.8
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 3.4e-20 102.1 79 60.8
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 9.8e-20 100.5 79 59.5
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 9.8e-20 100.5 79 59.5
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 2.9e-19 99.0 79 55.7
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 2.9e-19 99.0 79 55.7
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 4.9e-19 98.2 79 58.2
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 8.3e-19 97.4 79 57.0
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 2.0e-17 92.8 76 57.9
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 1.0e-16 90.5 57 68.4
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 1.7e-16 89.7 57 71.9
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 6.6e-16 87.8 57 68.4
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 6.6e-16 87.8 57 70.2
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 2.5e-15 85.9 57 66.7
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 9.5e-15 84.0 57 64.9
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 1.2e-14 83.6 70 55.7
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 2.1e-14 82.8 77 50.6
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.6e-14 82.0 59 66.1
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 3.1e-13 79.0 78 50.0
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 4.4e-12 75.1 77 46.8
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 7.5e-12 74.3 77 48.1
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 1.1e-10 70.5 41 73.2
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 1.1e-10 70.5 41 73.2
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.1e-10 70.5 75 49.3
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 1.9e-10 69.7 76 50.0
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 3.2e-10 68.9 40 72.5
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 1.5e-07 60.1 43 60.5
FvH4_2g11050 Fragaria vesca HOM05D007025 ORTHO05D008862 6.2e-06 54.7 37 59.5


User provided reference genes

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