Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 7.4e-264 913.3 455 100.0
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 5.6e-211 737.6 446 82.1
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 5.2e-209 731.1 441 81.2
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 2.2e-207 725.7 457 78.8
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 4.9e-207 724.5 457 78.8
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 8.3e-207 723.8 457 78.6
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 1.1e-206 723.4 457 78.8
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 1.4e-206 723.0 457 78.6
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 7.8e-205 717.2 460 77.4
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.0e-204 716.8 457 78.3
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 8.6e-204 713.8 460 77.0
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 4.3e-203 711.4 457 77.9
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 7.3e-203 710.7 456 76.1
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.5e-203 710.3 457 77.2
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 1.2e-202 709.9 458 77.3
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.2e-202 709.9 457 77.2
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 2.1e-202 709.1 457 75.9
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.6e-202 708.4 457 77.2
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 4.7e-202 708.0 457 77.9
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 1.8e-201 706.1 458 77.1
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 1.8e-201 706.1 458 76.2
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.1e-201 705.3 462 76.8
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 5.8e-200 701.0 458 76.6
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 7.6e-200 700.7 455 74.9
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 2.2e-199 699.1 459 76.3
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 3.8e-199 698.4 447 77.4
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 4.9e-199 698.0 449 76.8
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 4.9e-199 698.0 457 75.7
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 8.4e-199 697.2 448 76.1
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 1.2e-197 693.3 457 75.5
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 2.1e-197 692.6 458 75.5
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.7e-197 692.2 458 75.1
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 3.5e-197 691.8 446 76.2
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 3.5e-197 691.8 457 76.4
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.6e-197 691.4 455 75.6
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.3e-196 689.9 458 75.1
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.9e-196 688.3 456 75.9
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.6e-196 687.6 432 78.5
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 8.6e-196 687.2 456 75.7
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 8.6e-196 687.2 456 75.4
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.1e-195 686.8 456 75.7
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.3e-195 685.3 455 74.7
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.3e-195 684.9 455 74.3
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.3e-195 684.9 455 74.3
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.6e-194 682.9 432 78.2
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.1e-193 680.2 455 73.8
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 3.1e-193 678.7 457 75.7
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 5.2e-193 677.9 463 72.6
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 6.9e-193 677.6 439 76.8
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.6e-192 675.6 458 73.8
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 4.4e-192 674.9 446 74.9
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 9.9e-192 673.7 449 73.3
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 9.9e-192 673.7 457 72.2
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.7e-191 672.9 424 77.4
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 2.9e-191 672.2 457 72.2
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 8.4e-191 670.6 450 74.7
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.1e-190 670.2 426 75.8
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.1e-190 670.2 455 73.2
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.9e-190 669.5 459 73.4
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 3.2e-190 668.7 439 76.1
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 3.2e-190 668.7 431 76.1
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 3.2e-190 668.7 454 72.7
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 4.2e-190 668.3 431 76.6
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 5.4e-190 667.9 451 73.4
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 5.4e-190 667.9 441 73.7
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 9.3e-190 667.2 458 73.1
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 1.2e-189 666.8 453 72.2
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.2e-189 666.8 455 71.2
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 6.0e-189 664.5 424 76.4
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 2.3e-188 662.5 450 72.2
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 3.9e-188 661.8 429 74.8
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 3.9e-188 661.8 453 73.5
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 6.6e-188 661.0 427 76.3
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 6.6e-188 661.0 450 72.0
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 1.1e-187 660.2 450 72.0
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.9e-187 659.4 450 71.8
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.9e-187 659.4 450 71.8
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 4.3e-187 658.3 456 71.3
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 9.6e-187 657.1 433 74.1
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 3.6e-186 655.2 447 71.8
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 6.2e-186 654.4 450 72.9
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.8e-185 652.9 442 74.2
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 1.3e-183 646.7 468 70.9
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 3.8e-183 645.2 450 71.8
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 8.4e-183 644.0 446 72.4
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.1e-182 643.7 446 72.6
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 7.1e-182 641.0 458 72.5
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 7.1e-182 641.0 471 68.8
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 9.3e-182 640.6 447 73.6
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 9.3e-182 640.6 470 69.8
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.7e-181 639.0 439 71.8
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 7.9e-181 637.5 461 71.6
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 7.9e-181 637.5 444 70.3
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.3e-180 636.7 457 70.0
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.3e-180 636.7 431 74.7
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.3e-180 636.0 447 72.0
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 3.0e-180 635.6 448 72.3
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 8.7e-180 634.0 457 70.2
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.1e-179 633.6 446 71.5
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.5e-179 633.3 459 70.2
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 5.6e-179 631.3 447 72.0
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 8.1e-178 627.5 427 72.8
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 5.3e-177 624.8 461 69.8
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 9.0e-177 624.0 424 73.1
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 4.5e-176 621.7 459 70.8
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 7.1e-174 614.4 393 75.8
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.6e-173 613.2 494 64.4
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 8.7e-172 607.4 415 71.3
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 1.9e-171 606.3 426 68.3
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 2.5e-171 605.9 565 58.2
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.3e-171 605.5 459 67.1
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 4.3e-171 605.1 454 67.0
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 9.6e-171 604.0 454 66.7
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 9.0e-169 597.4 454 66.1
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 3.4e-168 595.5 456 64.5
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.2e-162 576.2 422 67.8
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 6.9e-161 571.2 439 66.7
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.1e-157 559.7 430 65.6
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 1.3e-154 550.4 364 73.9
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.7e-154 550.1 446 62.6
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.7e-154 548.9 459 63.8
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 3.4e-152 542.3 441 60.3
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 2.5e-150 536.2 361 72.9
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.0e-148 530.8 352 75.6
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 2.2e-143 513.1 431 61.3
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 2.2e-143 513.1 352 69.9
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.4e-142 510.4 465 59.1
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 9.4e-142 507.7 428 60.5
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.2e-141 507.3 398 65.6
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 1.4e-140 503.8 441 60.3
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 5.0e-135 485.3 456 57.9
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 7.2e-134 481.5 444 57.4
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 2.0e-123 446.8 312 68.6
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.2e-117 427.6 301 70.8
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.8e-100 368.6 337 58.2
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 4.0e-92 342.8 257 68.1
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 4.7e-85 319.3 211 76.8
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.1e-84 318.2 208 78.4
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 8.9e-84 315.1 261 62.8
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 4.4e-83 312.8 429 44.8
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 2.3e-71 273.9 197 70.1
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 1.7e-66 257.7 180 73.3
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.1e-52 211.8 154 71.4
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 5.7e-46 189.5 138 70.3
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 2.5e-41 174.1 217 49.3
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 2.6e-35 154.1 150 53.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 3.2e-33 147.1 149 54.4
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 7.4e-22 109.4 60 91.7
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.7e-11 74.3 56 62.5


User provided reference genes

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