Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 9.2e-67 256.9 145 100.0
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 2.1e-42 176.0 142 70.4
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 2.7e-42 175.6 144 69.4
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 3.5e-42 175.3 145 69.7
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 3.5e-42 175.3 144 70.8
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 4.6e-42 174.9 145 70.3
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 1.7e-41 172.9 145 67.6
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 2.3e-41 172.6 143 68.5
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 2.3e-41 172.6 141 70.9
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 6.6e-41 171.0 143 69.2
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 8.7e-41 170.6 144 67.4
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 8.7e-41 170.6 145 68.3
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 1.3e-39 166.8 145 66.2
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 1.6e-39 166.4 144 66.7
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 3.6e-39 165.2 145 66.2
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 4.8e-39 164.9 145 66.2
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 1.4e-38 163.3 143 67.1
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 1.8e-38 162.9 143 66.4
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 2.4e-38 162.5 144 63.9
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 4.0e-38 161.8 128 71.1
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 5.3e-38 161.4 144 64.6
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 5.3e-38 161.4 143 67.1
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 6.9e-38 161.0 143 64.3
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 6.9e-38 161.0 143 64.3
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 9.0e-38 160.6 144 64.6
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 1.2e-37 160.2 144 64.6
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 1.5e-37 159.8 143 64.3
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 2.6e-37 159.1 145 64.1
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 2.6e-37 159.1 144 65.3
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 9.9e-37 157.1 143 65.0
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 9.9e-37 157.1 143 65.7
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 9.9e-37 157.1 145 62.1
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 1.3e-36 156.8 143 67.1
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.7e-36 156.4 144 63.9
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 1.7e-36 156.4 145 62.8
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 2.2e-36 156.0 145 62.8
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.9e-36 155.6 144 62.5
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 2.9e-36 155.6 143 62.9
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 3.8e-36 155.2 142 65.5
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 4.9e-36 154.8 144 61.8
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 4.9e-36 154.8 144 63.9
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 8.4e-36 154.1 144 63.2
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 1.1e-35 153.7 144 64.6
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 1.1e-35 153.7 144 60.4
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 1.4e-35 153.3 143 61.5
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 1.4e-35 153.3 143 62.9
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 1.9e-35 152.9 144 63.2
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 1.9e-35 152.9 143 62.9
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 1.9e-35 152.9 143 64.3
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 2.4e-35 152.5 143 61.5
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 2.4e-35 152.5 145 62.1
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 3.2e-35 152.1 144 61.8
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 3.2e-35 152.1 144 61.8
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 3.2e-35 152.1 144 61.8
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.6e-34 149.8 143 63.6
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 2.1e-34 149.4 143 60.8
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 2.1e-34 149.4 144 60.4
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 3.5e-34 148.7 140 65.0
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 3.5e-34 148.7 145 60.7
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 3.5e-34 148.7 143 62.2
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 6.0e-34 147.9 143 63.6
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 1.0e-33 147.1 145 60.0
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 1.3e-33 146.7 145 59.3
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 1.8e-33 146.4 145 59.3
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 1.8e-33 146.4 142 62.7
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 2.3e-33 146.0 145 60.7
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 5.1e-33 144.8 137 62.0
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 6.7e-33 144.4 143 60.8
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.1e-32 143.7 141 60.3
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.1e-32 143.7 142 58.5
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 1.5e-32 143.3 140 60.0
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 4.3e-32 141.7 143 59.4
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 5.6e-32 141.4 143 60.8
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 7.4e-32 141.0 145 59.3
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 7.4e-32 141.0 145 59.3
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 9.6e-32 140.6 144 58.3
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 1.3e-31 140.2 143 56.6
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 6.2e-31 137.9 143 58.7
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 1.1e-30 137.1 143 58.7
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 5.3e-30 134.8 144 57.6
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 2.6e-29 132.5 88 78.4
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 4.5e-29 131.7 141 56.7
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 9.9e-29 130.6 88 78.4
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 2.9e-28 129.0 107 71.0
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 4.9e-28 128.3 144 54.9
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 8.4e-28 127.5 143 54.5
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 1.1e-27 127.1 144 56.2
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 7.1e-27 124.4 142 50.7
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 7.1e-27 124.4 126 58.7
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 1.1e-24 117.1 143 52.4
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 4.3e-24 115.2 142 41.5
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 3.7e-23 112.1 143 51.0
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 3.7e-23 112.1 143 46.9
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 8.2e-23 110.9 72 81.9
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 1.1e-22 110.5 145 50.3
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 1.1e-22 110.5 107 63.6
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 1.4e-22 110.2 85 67.1
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 2.4e-22 109.4 106 64.2
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 4.0e-22 108.6 143 50.3
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 9.0e-22 107.5 143 47.6
Psat2g007880 Pisum sativum HOM05D007100 ORTHO05D008958 2.0e-21 106.3 81 75.3
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 4.9e-20 101.7 145 48.3
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.6e-18 96.7 85 58.8
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 3.5e-18 95.5 85 57.6
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 3.5e-18 95.5 85 57.6
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 3.0e-17 92.4 106 54.7
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 6.7e-17 91.3 142 40.8
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 2.5e-16 89.4 95 57.9
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 2.2e-15 86.3 70 57.1
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 2.6e-13 79.3 141 34.0
ATR0829G181 Amborella trichopoda HOM05D007100 ORTHO05D008958 2.2e-12 76.3 139 45.3
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 8.5e-12 74.3 62 61.3
ATR0743G144 Amborella trichopoda HOM05D007100 ORTHO05D008958 3.2e-11 72.4 104 52.9
Haze_21505 Corylus avellana HOM05D007100 ORTHO05D008958 3.6e-10 68.9 56 73.2
AUR62039691 Chenopodium quinoa HOM05D026575 ORTHO05D028765 7.9e-10 67.8 59 66.1
AUR62044181 Chenopodium quinoa HOM05D026575 ORTHO05D028765 7.9e-10 67.8 59 66.1
ATR0071G034 Amborella trichopoda HOM05D007100 ORTHO05D008958 5.1e-09 65.1 99 51.5


User provided reference genes

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