Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 0.0e+00 2374.4 1340 100.0
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1196.8 1260 54.4
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1182.5 1258 52.9
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1149.8 1206 54.1
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1139.4 1261 52.6
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1135.2 1251 52.1
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1114.8 1254 52.2
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1106.3 1250 50.7
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1105.1 1250 51.2
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1105.1 1258 51.3
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1100.9 1262 50.9
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1099.3 1267 50.4
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1098.2 1259 50.8
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1091.3 1261 50.8
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1090.9 1298 49.3
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1085.5 1265 50.2
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1083.6 1256 49.4
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1078.2 1251 50.0
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1078.2 1262 51.2
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1076.6 1274 50.3
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1075.8 1257 50.2
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1075.1 1258 50.3
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 9.2e-312 1074.3 1208 51.7
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 6.4e-311 1071.2 1232 50.1
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 1.4e-310 1070.1 1210 51.2
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 9.1e-310 1067.4 1218 51.0
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 4.5e-309 1065.1 1210 51.7
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 5.9e-309 1064.7 1271 50.1
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 6.5e-308 1061.2 1267 48.5
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 6.5e-308 1061.2 1246 49.5
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 8.5e-308 1060.8 1257 49.2
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 3.2e-307 1058.9 1198 50.3
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 3.2e-307 1058.9 1327 48.4
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 5.5e-307 1058.1 1276 49.4
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 9.4e-307 1057.4 1273 49.6
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 1.6e-306 1056.6 1251 49.1
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 3.6e-306 1055.4 1261 49.4
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 7.9e-306 1054.3 1253 48.5
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 2.3e-305 1052.7 1243 49.1
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 8.8e-305 1050.8 1249 49.2
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 1.5e-304 1050.0 1262 47.9
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 2.6e-304 1049.3 1263 48.1
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 3.3e-304 1048.9 1269 48.1
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 3.3e-304 1048.9 1258 48.3
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 1.3e-303 1047.0 1246 49.0
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 2.4e-302 1042.7 1237 49.2
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 1.2e-301 1040.4 1258 49.8
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 2.2e-300 1036.2 1190 49.2
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 2.9e-300 1035.8 1270 48.0
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 3.2e-299 1032.3 1261 48.1
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 4.2e-299 1031.9 1256 48.0
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 1.2e-298 1030.4 1210 50.5
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 1.6e-298 1030.0 1252 48.2
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 6.1e-298 1028.1 1211 50.5
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 1.8e-297 1026.5 1314 48.0
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 1.7e-295 1020.0 1262 48.9
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 3.7e-295 1018.8 1267 47.1
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 6.3e-295 1018.1 1200 48.2
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 6.3e-295 1018.1 1199 49.0
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 1.8e-294 1016.5 1210 49.9
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 2.4e-294 1016.1 1265 49.0
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 1.6e-293 1013.4 1218 48.0
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 2.0e-293 1013.1 1342 47.2
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 1.3e-292 1010.4 1204 49.9
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 2.9e-292 1009.2 1299 46.7
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 3.8e-292 1008.8 1274 46.6
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 6.5e-292 1008.1 1253 47.6
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 6.5e-292 1008.1 1237 48.7
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 1.9e-291 1006.5 1261 47.6
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 4.2e-291 1005.4 1261 47.6
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 1.2e-290 1003.8 1269 47.4
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 1.0e-289 1000.7 1255 47.5
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 3.0e-289 999.2 1249 46.8
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 5.2e-289 998.4 1262 46.8
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 5.2e-289 998.4 1252 46.4
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 4.8e-287 991.9 1268 46.8
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 2.7e-285 986.1 1251 46.0
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 4.5e-285 985.3 1268 46.6
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 5.9e-285 984.9 1260 46.5
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.3e-284 983.8 1249 47.2
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 8.5e-284 981.1 1272 45.4
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 1.8e-281 973.4 1257 46.1
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 1.8e-281 973.4 1278 45.3
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 9.8e-280 967.6 1264 45.3
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 2.4e-278 963.0 1222 46.5
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 3.1e-278 962.6 1217 45.7
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 7.0e-278 961.4 1223 45.7
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 7.0e-278 961.4 1217 46.5
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 7.0e-278 961.4 1217 46.5
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 1.6e-277 960.3 1301 44.7
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 4.5e-277 958.7 1270 44.8
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 1.7e-276 956.8 1247 46.1
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 7.2e-275 951.4 1221 45.9
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 6.1e-274 948.3 1221 45.8
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 1.0e-273 947.6 1258 44.4
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 1.8e-270 936.8 1263 44.2
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 1.6e-261 907.1 1244 45.5
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 1.6e-261 907.1 1225 44.5
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 1.9e-259 900.2 1213 44.4
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 2.1e-253 880.2 1100 47.2
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.3e-243 845.1 1262 42.9
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 2.4e-241 840.1 1258 42.8
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 2.4e-241 840.1 1260 42.0
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 7.6e-240 835.1 1247 42.2
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 1.5e-235 820.8 1261 41.4
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 7.8e-229 798.5 1122 43.2
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 3.3e-211 740.0 1084 43.0
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 6.9e-209 732.3 752 54.5
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 5.3e-201 706.1 974 45.7
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.5e-184 651.4 647 54.9
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 2.6e-155 554.3 1249 33.9
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 2.8e-154 550.8 1228 32.7
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.4e-153 548.5 1213 33.0
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 6.6e-151 539.7 1226 32.6
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 6.8e-148 529.6 1197 33.2
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 1.9e-142 511.5 1200 31.9
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 2.4e-129 468.0 1142 31.9
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 2.8e-117 427.9 431 52.7
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 1.3e-114 419.1 526 49.8
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 6.4e-114 416.8 602 42.2
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 1.9e-102 378.6 459 49.5
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.6e-101 375.6 845 35.6
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.4e-100 372.5 1228 27.7
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 8.7e-95 353.2 692 37.3
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 1.1e-94 352.8 447 48.3
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 4.5e-67 261.2 1051 26.8
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 1.2e-64 253.1 1033 26.1
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.9e-57 229.2 520 32.1
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.6e-56 226.1 515 31.8
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 3.2e-49 201.8 312 39.4
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 1.4e-44 186.4 243 44.0
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 1.5e-41 176.4 1209 23.7
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 5.7e-38 164.5 1248 22.8
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 5.2e-31 141.4 211 37.9
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 5.2e-23 114.8 129 48.8
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 3.5e-19 102.1 145 49.0
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 1.1e-17 97.1 131 40.5
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 5.6e-17 94.7 61 77.0
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 2.2e-13 82.8 72 63.9
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 4.9e-13 81.6 71 54.9
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 9.2e-12 77.4 83 48.2
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 9.2e-12 77.4 190 29.5
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.3e-10 72.8 90 41.1
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 5.1e-10 71.6 84 40.5
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 5.6e-09 68.2 68 44.1
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 3.6e-08 65.5 71 49.3
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 1.4e-07 63.5 68 41.2
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 8.9e-07 60.8 52 55.8
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 8.9e-07 60.8 52 55.8
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.0e-06 59.7 119 37.0
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 2.6e-06 59.3 41 73.2


User provided reference genes

Program Settings