Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 9.7e-135 483.8 304 100.0
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 9.5e-90 334.3 294 66.7
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 8.0e-89 331.3 288 67.0
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.4e-88 330.5 288 70.5
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 2.3e-88 329.7 299 64.2
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 4.0e-88 328.9 294 61.6
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 1.5e-87 327.0 317 65.0
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.6e-87 326.2 297 71.4
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 2.4e-85 319.7 289 70.2
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 6.0e-84 315.1 294 63.9
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 3.0e-83 312.8 296 62.5
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 6.6e-83 311.6 303 63.0
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.5e-82 310.5 292 58.9
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.3e-82 309.3 297 70.4
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 4.3e-82 308.9 297 70.4
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 4.3e-82 308.9 292 58.9
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 5.6e-82 308.5 299 61.9
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 9.5e-82 307.8 294 63.9
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 9.5e-82 307.8 297 57.6
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.6e-81 307.0 288 66.0
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.8e-80 303.5 291 61.5
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 2.3e-80 303.1 303 60.7
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 2.3e-80 303.1 295 62.7
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.3e-80 303.1 304 58.2
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 3.1e-80 302.8 294 63.3
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 5.2e-80 302.0 294 64.6
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 5.2e-80 302.0 303 62.4
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 8.9e-80 301.2 306 60.5
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 8.9e-80 301.2 289 60.9
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 1.2e-79 300.8 291 61.5
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 2.0e-79 300.1 299 60.5
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 3.4e-79 299.3 278 65.1
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 9.9e-79 297.7 295 61.4
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 2.9e-78 296.2 272 59.6
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 8.3e-78 294.7 300 63.7
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.1e-77 294.3 277 65.7
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 1.1e-77 294.3 297 59.9
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.4e-77 293.9 291 64.9
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.4e-77 293.9 294 60.2
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.9e-77 293.5 281 63.7
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 5.4e-77 292.0 295 60.3
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 7.1e-77 291.6 288 56.9
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 3.5e-76 289.3 277 62.1
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 1.0e-75 287.7 299 61.5
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.0e-75 287.7 298 60.1
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 2.3e-75 286.6 289 62.6
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 8.6e-75 284.6 287 60.3
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 1.1e-74 284.3 297 63.0
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.9e-74 283.5 274 58.0
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.9e-74 283.5 288 61.8
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 1.6e-73 280.4 291 56.7
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.1e-73 280.0 277 64.6
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 1.1e-72 277.7 278 62.2
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 1.8e-72 276.9 292 57.2
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 3.1e-72 276.2 295 60.0
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.2e-71 274.2 199 76.4
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.5e-71 273.9 289 60.9
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.4e-71 272.7 296 66.6
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 1.7e-70 270.4 311 56.6
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 2.9e-70 269.6 295 60.0
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 4.9e-70 268.9 299 68.2
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 4.9e-70 268.9 291 54.0
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 8.4e-70 268.1 252 63.1
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 1.4e-69 267.3 325 57.2
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 3.2e-69 266.2 303 60.1
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 7.8e-68 261.5 300 58.0
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 3.0e-67 259.6 297 67.3
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 8.7e-67 258.1 295 68.8
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.1e-66 257.7 298 64.8
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 2.5e-66 256.5 299 61.2
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.3e-66 256.1 297 65.7
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 4.3e-66 255.8 295 68.5
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 1.3e-65 254.2 289 56.1
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.3e-65 254.2 289 57.1
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.6e-65 253.8 291 57.7
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 4.8e-65 252.3 209 69.4
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 8.1e-65 251.5 286 65.0
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 8.1e-65 251.5 295 63.7
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.4e-64 250.8 297 63.3
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 9.0e-64 248.1 295 65.1
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 2.0e-63 246.9 300 65.7
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.0e-63 246.9 303 63.7
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 2.6e-63 246.5 289 55.0
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.7e-62 243.8 297 61.6
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 3.8e-62 242.7 306 54.6
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 6.4e-62 241.9 274 59.5
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 1.9e-61 240.4 317 51.4
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 3.5e-60 236.1 326 57.4
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 3.9e-59 232.6 314 53.8
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.5e-58 229.9 189 62.4
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 3.3e-58 229.6 306 62.1
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 3.3e-58 229.6 306 62.1
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 4.3e-58 229.2 295 59.7
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 2.8e-57 226.5 295 61.0
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 4.8e-57 225.7 277 55.6
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 1.8e-56 223.8 289 49.1
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 1.8e-56 223.8 289 49.1
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 5.3e-56 222.2 294 51.4
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 9.0e-56 221.5 291 54.0
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 9.0e-56 221.5 291 54.0
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 9.0e-56 221.5 291 54.0
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 1.5e-55 220.7 310 61.3
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 1.3e-54 217.6 289 57.4
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 2.9e-54 216.5 289 57.1
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 6.4e-54 215.3 282 57.8
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 4.2e-53 212.6 290 59.3
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 2.7e-52 209.9 263 49.4
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.9e-50 203.8 259 60.2
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.4e-45 187.6 189 56.6
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.9e-45 187.2 313 47.9
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 5.1e-43 179.1 158 72.2
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 5.5e-37 159.1 148 54.7
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 9.3e-37 158.3 217 46.5
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.3e-33 147.9 137 56.9
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.3e-33 147.9 163 52.1
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 4.8e-33 146.0 106 67.9
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 6.5e-30 135.6 79 79.7
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.1e-29 134.8 162 66.0
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 6.9e-24 115.5 129 61.2
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 8.5e-22 108.6 167 44.3
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 3.3e-18 96.7 132 58.3
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.4e-16 90.5 48 85.4
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 4.1e-16 89.7 116 45.7
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 7.7e-15 85.5 62 67.7
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.5e-14 82.4 93 63.4
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.1e-13 81.6 43 81.4
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 5.5e-13 79.3 76 51.3
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 1.4e-11 74.7 73 50.7
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 1.4e-11 74.7 73 50.7
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.7e-07 60.5 86 46.5
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 4.5e-07 59.7 29 89.7
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 2.2e-06 57.4 68 38.2
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 2.9e-06 57.0 41 58.5
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 2.9e-06 57.0 47 57.4
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 2.9e-06 57.0 47 57.4
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 3.8e-06 56.6 77 37.7
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 6.5e-06 55.8 51 51.0
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 6.5e-06 55.8 53 60.4
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 6.5e-06 55.8 47 55.3
SEGI_21581 Sequoiadendron giganteum HOM05D005384 ORTHO05D006477 6.5e-06 55.8 66 40.9
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 6.5e-06 55.8 59 47.5
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 8.5e-06 55.5 51 51.0


User provided reference genes

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