Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 3.5e-100 368.6 232 100.0
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 2.7e-76 289.3 228 65.8
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 4.6e-76 288.5 211 76.3
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 3.0e-75 285.8 228 64.5
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 4.3e-74 282.0 226 63.7
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 9.5e-74 280.8 228 71.1
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.6e-73 280.0 222 67.1
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.6e-73 280.0 234 63.2
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.8e-72 276.6 214 76.6
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 2.6e-71 272.7 228 65.4
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 1.7e-70 270.0 229 63.8
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 2.2e-70 269.6 228 74.1
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 3.7e-70 268.9 232 59.1
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 4.9e-70 268.5 236 59.3
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 4.9e-70 268.5 227 62.6
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 8.3e-70 267.7 227 74.4
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.1e-69 267.3 222 61.7
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 1.4e-69 266.9 232 58.6
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.4e-69 266.9 226 65.9
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 5.4e-69 265.0 222 62.6
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 5.4e-69 265.0 227 60.4
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 7.1e-69 264.6 230 61.7
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 2.1e-68 263.1 239 66.9
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 2.7e-68 262.7 226 59.7
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 2.7e-68 262.7 229 58.5
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 7.8e-68 261.2 228 65.4
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 1.3e-67 260.4 227 59.5
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 1.7e-67 260.0 230 59.6
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 2.3e-67 259.6 224 62.1
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 3.0e-67 259.2 227 62.6
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 3.9e-67 258.8 226 65.5
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 5.1e-67 258.5 231 65.8
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 1.1e-66 257.3 226 60.2
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.1e-66 257.3 228 63.2
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.1e-66 257.3 232 69.0
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 1.5e-66 256.9 229 72.5
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.9e-66 256.5 223 69.1
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 1.9e-66 256.5 222 70.3
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.5e-66 256.1 228 72.8
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 2.5e-66 256.1 225 60.4
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 4.3e-66 255.4 206 61.7
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 4.3e-66 255.4 245 60.8
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.2e-65 253.8 227 62.1
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 6.2e-65 251.5 227 56.8
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 1.1e-64 250.8 228 59.6
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.4e-64 250.4 208 60.1
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 2.4e-64 249.6 222 63.1
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 2.4e-64 249.6 204 61.3
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 5.2e-64 248.4 231 55.4
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 8.9e-64 247.7 205 61.0
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.2e-63 247.3 226 56.6
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 1.2e-63 247.3 228 56.6
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 1.5e-63 246.9 209 63.2
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 4.4e-63 245.4 210 64.3
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 7.6e-63 244.6 217 57.6
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 9.9e-63 244.2 228 70.6
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 9.9e-63 244.2 228 70.6
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 1.3e-62 243.8 207 61.4
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 1.3e-62 243.8 210 58.6
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.9e-62 242.7 202 70.8
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 6.4e-62 241.5 221 61.5
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 8.4e-62 241.1 229 62.4
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 5.4e-61 238.4 208 62.0
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 9.2e-61 237.7 231 65.4
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 1.6e-60 236.9 210 64.3
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 4.6e-60 235.3 221 52.5
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 6.0e-60 235.0 219 55.7
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.8e-60 234.6 228 65.4
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.8e-60 234.6 228 65.4
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 7.8e-60 234.6 224 66.1
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.7e-59 233.4 213 62.4
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 1.7e-59 233.4 228 53.9
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 3.0e-59 232.6 216 57.9
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 3.9e-59 232.3 229 57.2
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 8.7e-59 231.1 228 65.4
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 8.7e-59 231.1 228 65.4
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 1.1e-58 230.7 209 60.8
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 1.1e-58 230.7 202 62.4
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.5e-58 230.3 237 57.0
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.9e-58 229.9 214 61.7
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 2.5e-58 229.6 231 51.9
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 5.6e-58 228.4 202 56.4
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 1.2e-57 227.3 224 68.3
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 1.6e-57 226.9 210 74.8
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 2.1e-57 226.5 224 68.3
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 2.8e-57 226.1 218 52.8
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.8e-57 226.1 228 71.1
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.8e-57 226.1 228 71.1
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 3.6e-57 225.7 224 67.9
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 4.7e-57 225.3 201 70.6
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 8.1e-57 224.6 229 65.9
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 1.1e-56 224.2 206 62.1
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.4e-56 223.8 204 53.4
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.4e-56 223.8 235 62.6
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 4.0e-56 222.2 206 56.3
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 1.5e-55 220.3 228 58.3
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 2.0e-55 219.9 205 66.8
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.6e-55 219.5 211 68.7
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.6e-55 219.5 211 68.7
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.6e-55 219.5 211 68.7
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.6e-55 219.5 211 68.7
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 3.4e-55 219.2 223 65.5
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.4e-55 219.2 238 59.2
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.4e-55 219.2 234 59.8
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 4.4e-55 218.8 220 55.0
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 5.8e-55 218.4 199 60.8
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 7.6e-55 218.0 207 66.2
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 9.9e-55 217.6 235 59.1
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 2.9e-54 216.1 230 64.8
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 3.8e-54 215.7 207 65.7
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 4.9e-54 215.3 212 55.7
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 8.4e-54 214.5 205 68.8
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 1.1e-53 214.2 209 67.9
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 3.2e-53 212.6 223 64.6
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 2.1e-52 209.9 221 63.3
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.0e-51 207.6 195 76.9
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.3e-51 206.5 253 45.8
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 3.9e-51 205.7 234 59.4
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 1.2e-47 194.1 209 63.2
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 7.6e-47 191.4 185 51.4
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 3.8e-46 189.1 202 60.9
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 3.8e-46 189.1 202 60.9
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 4.9e-46 188.7 169 73.4
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.4e-45 187.2 217 47.9
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.2e-45 186.0 217 47.5
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 4.2e-45 185.7 181 50.3
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 4.6e-44 182.2 184 49.5
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 8.7e-43 177.9 162 80.2
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.5e-42 177.2 194 49.0
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.5e-42 177.2 186 48.9
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.6e-41 173.7 170 60.6
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 2.1e-41 173.3 202 50.5
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 3.7e-41 172.6 170 53.5
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 3.1e-40 169.5 183 53.0
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 4.0e-40 169.1 189 55.0
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 2.0e-39 166.8 205 43.9
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 2.6e-39 166.4 202 43.1
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 2.6e-39 166.4 155 53.5
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 4.9e-38 162.2 199 42.2
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.9e-37 160.2 218 46.3
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 4.2e-37 159.1 196 50.0
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 7.1e-37 158.3 217 46.1
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 2.1e-36 156.8 208 47.1
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 7.9e-36 154.8 208 44.7
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.8e-35 153.7 204 44.1
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.3e-35 153.3 204 44.1
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 1.5e-34 150.6 123 62.6
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.9e-34 150.2 195 45.1
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.1e-33 146.7 202 44.1
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 2.2e-30 136.7 185 38.4
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 8.4e-30 134.8 228 37.3
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.4e-29 134.0 130 59.2
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.4e-29 134.0 215 34.4
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 9.3e-29 131.3 194 36.1
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.7e-28 129.8 197 41.1
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 2.3e-27 126.7 156 44.9
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 4.3e-26 122.5 102 60.8
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 2.2e-22 110.2 161 42.9
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.5e-21 106.7 161 41.6
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 3.2e-21 106.3 197 39.1
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 2.4e-16 90.1 74 62.2
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 4.5e-15 85.9 57 77.2
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 8.5e-14 81.6 57 66.7
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 1.1e-13 81.3 77 57.1
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 2.3e-11 73.6 55 61.8
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 1.1e-10 71.2 38 86.8
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.4e-08 64.3 157 29.3
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 1.2e-07 61.2 222 23.4
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 6.5e-06 55.5 221 23.5


User provided reference genes

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