Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 5.3e-43 177.2 83 100.0
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 7.4e-37 156.8 76 94.7
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 1.1e-35 152.9 78 88.5
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 1.4e-35 152.5 76 90.8
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 2.4e-35 151.8 78 88.5
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 3.1e-35 151.4 82 84.1
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 3.1e-35 151.4 78 88.5
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 5.3e-35 150.6 78 88.5
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 6.9e-35 150.2 78 85.9
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 6.9e-35 150.2 78 85.9
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 9.1e-35 149.8 80 82.5
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.2e-34 149.4 80 83.8
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.2e-34 149.4 80 83.8
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.2e-34 149.4 80 83.8
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 1.5e-34 149.1 82 82.9
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 1.5e-34 149.1 80 82.5
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 1.5e-34 149.1 73 93.2
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 1.5e-34 149.1 73 93.2
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 1.5e-34 149.1 78 87.2
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.0e-34 148.7 80 81.2
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 2.0e-34 148.7 80 81.2
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.0e-34 148.7 80 82.5
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 2.0e-34 148.7 80 82.5
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.0e-34 148.7 80 81.2
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 2.6e-34 148.3 74 89.2
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 2.6e-34 148.3 80 81.2
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 2.6e-34 148.3 80 81.2
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 2.6e-34 148.3 80 81.2
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 2.6e-34 148.3 83 83.1
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 2.6e-34 148.3 78 85.9
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 3.4e-34 147.9 78 85.9
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 4.5e-34 147.5 77 87.0
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 4.5e-34 147.5 80 86.2
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 4.5e-34 147.5 80 80.0
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 4.5e-34 147.5 78 84.6
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 4.5e-34 147.5 77 84.4
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 4.5e-34 147.5 81 84.0
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 5.9e-34 147.1 83 81.9
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.9e-34 147.1 80 81.2
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 5.9e-34 147.1 71 93.0
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 7.7e-34 146.7 80 82.5
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 7.7e-34 146.7 78 87.2
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 7.7e-34 146.7 73 90.4
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 1.0e-33 146.4 80 80.0
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 1.0e-33 146.4 80 80.0
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 1.0e-33 146.4 80 80.0
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 1.0e-33 146.4 80 80.0
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 1.0e-33 146.4 80 80.0
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 1.0e-33 146.4 80 80.0
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 1.0e-33 146.4 80 80.0
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 1.0e-33 146.4 80 80.0
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 1.0e-33 146.4 78 84.6
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 1.0e-33 146.4 80 82.5
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 1.0e-33 146.4 73 90.4
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 1.0e-33 146.4 73 90.4
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 1.0e-33 146.4 80 80.0
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 1.3e-33 146.0 73 89.0
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 1.3e-33 146.0 78 82.1
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 1.3e-33 146.0 78 83.3
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 1.3e-33 146.0 80 80.0
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.3e-33 146.0 79 83.5
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 1.7e-33 145.6 81 84.0
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.7e-33 145.6 80 82.5
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.7e-33 145.6 80 82.5
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.7e-33 145.6 80 82.5
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 1.7e-33 145.6 78 83.3
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 2.2e-33 145.2 78 82.1
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 2.9e-33 144.8 80 80.0
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 2.9e-33 144.8 80 81.2
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 3.8e-33 144.4 80 78.8
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 3.8e-33 144.4 82 79.3
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 3.8e-33 144.4 74 87.8
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 3.8e-33 144.4 73 89.0
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 3.8e-33 144.4 76 88.2
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 3.8e-33 144.4 76 88.2
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 3.8e-33 144.4 76 88.2
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 3.8e-33 144.4 76 88.2
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 5.0e-33 144.1 73 87.7
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 5.0e-33 144.1 80 78.8
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 5.0e-33 144.1 80 78.8
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 5.0e-33 144.1 80 78.8
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 5.0e-33 144.1 74 86.5
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 5.0e-33 144.1 76 88.2
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 6.5e-33 143.7 76 86.8
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 8.5e-33 143.3 81 77.8
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 1.1e-32 142.9 79 79.7
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 1.1e-32 142.9 76 84.2
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 1.1e-32 142.9 76 86.8
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 1.4e-32 142.5 80 80.0
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 1.4e-32 142.5 76 82.9
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 1.4e-32 142.5 74 85.1
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 1.4e-32 142.5 74 85.1
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 1.9e-32 142.1 76 82.9
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 1.9e-32 142.1 79 78.5
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 1.9e-32 142.1 80 81.2
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 2.5e-32 141.7 74 86.5
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 2.5e-32 141.7 74 86.5
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 2.5e-32 141.7 74 86.5
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 2.5e-32 141.7 79 78.5
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 2.5e-32 141.7 80 77.5
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 2.5e-32 141.7 76 82.9
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 3.2e-32 141.4 79 79.7
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 3.2e-32 141.4 74 83.8
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 3.2e-32 141.4 78 82.1
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 4.2e-32 141.0 80 78.8
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 5.5e-32 140.6 78 80.8
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 5.5e-32 140.6 79 79.7
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 7.2e-32 140.2 78 80.8
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 7.2e-32 140.2 76 81.6
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 9.4e-32 139.8 80 77.5
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 9.4e-32 139.8 72 84.7
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 1.6e-31 139.0 97 70.1
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 2.1e-31 138.7 78 79.5
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 2.7e-31 138.3 69 87.0
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 3.6e-31 137.9 74 82.4
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 3.6e-31 137.9 78 78.2
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 6.1e-31 137.1 63 95.2
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 1.0e-30 136.3 75 80.0
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 2.3e-30 135.2 65 89.2
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 7.4e-29 130.2 62 90.3
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 7.4e-29 130.2 62 90.3
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 2.2e-28 128.6 61 90.2
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 2.2e-28 128.6 74 75.7
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 2.8e-28 128.3 101 62.4
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 2.8e-28 128.3 61 90.2
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 4.8e-28 127.5 71 84.5
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 6.3e-28 127.1 97 63.9
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 1.4e-27 125.9 60 88.3
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 5.0e-25 117.5 64 84.4
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-24 116.3 75 72.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 1.6e-23 112.5 50 94.0
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 4.7e-23 110.9 50 92.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 8.0e-23 110.2 50 92.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 3.0e-22 108.2 50 90.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 3.3e-21 104.8 49 87.8
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 4.4e-21 104.4 80 62.5
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 1.7e-20 102.4 73 63.0
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 6.3e-20 100.5 73 65.8
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 1.8e-19 99.0 64 65.6
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 4.1e-19 97.8 80 55.0
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.5e-16 89.4 50 82.0
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 4.0e-14 81.3 74 50.0
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 3.6e-07 58.2 36 69.4
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 5.2e-06 54.3 23 91.3


User provided reference genes

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