Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 5.0e-34 147.1 71 100.0
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 6.6e-18 93.6 58 74.1
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 8.6e-18 93.2 56 78.6
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 8.6e-18 93.2 56 78.6
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 8.6e-18 93.2 56 76.8
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.1e-17 92.8 48 85.4
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.1e-17 92.8 55 78.2
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 1.1e-17 92.8 48 83.3
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-17 92.8 53 77.4
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 1.1e-17 92.8 49 83.7
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 1.1e-17 92.8 52 75.0
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 1.1e-17 92.8 52 75.0
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.5e-17 92.4 56 76.8
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.5e-17 92.4 50 82.0
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.5e-17 92.4 48 85.4
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 1.5e-17 92.4 56 78.6
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 1.9e-17 92.0 56 76.8
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 2.5e-17 91.7 49 83.7
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 3.3e-17 91.3 49 81.6
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 3.3e-17 91.3 48 83.3
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 3.3e-17 91.3 48 83.3
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.3e-17 91.3 48 83.3
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.3e-17 91.3 48 83.3
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.3e-17 91.3 48 83.3
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.3e-17 91.3 48 83.3
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.3e-17 91.3 48 83.3
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 3.3e-17 91.3 49 83.7
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 3.3e-17 91.3 48 83.3
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 4.3e-17 90.9 55 76.4
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 4.3e-17 90.9 53 77.4
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 5.6e-17 90.5 49 83.7
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 5.6e-17 90.5 49 81.6
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 5.6e-17 90.5 56 76.8
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.6e-17 90.5 57 75.4
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.6e-17 90.5 57 75.4
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.6e-17 90.5 57 75.4
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 5.6e-17 90.5 57 75.4
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 5.6e-17 90.5 57 75.4
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.6e-17 90.5 49 83.7
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 5.6e-17 90.5 52 78.8
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 5.6e-17 90.5 56 78.6
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 7.3e-17 90.1 55 78.2
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 7.3e-17 90.1 49 79.6
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 7.3e-17 90.1 56 75.0
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.3e-17 90.1 47 85.1
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.3e-17 90.1 47 85.1
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 7.3e-17 90.1 47 85.1
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 7.3e-17 90.1 47 85.1
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 7.3e-17 90.1 52 78.8
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 9.5e-17 89.7 56 75.0
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 9.5e-17 89.7 48 83.3
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 9.5e-17 89.7 48 83.3
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 9.5e-17 89.7 48 83.3
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 9.5e-17 89.7 47 85.1
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 9.5e-17 89.7 56 75.0
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.2e-16 89.4 47 83.0
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.2e-16 89.4 56 69.6
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 1.2e-16 89.4 49 81.6
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 1.2e-16 89.4 60 70.0
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.6e-16 89.0 48 79.2
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 1.6e-16 89.0 52 73.1
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.6e-16 89.0 56 73.2
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.1e-16 88.6 49 81.6
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.1e-16 88.6 56 73.2
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 2.1e-16 88.6 47 80.9
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 2.8e-16 88.2 47 80.9
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.8e-16 88.2 48 83.3
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.8e-16 88.2 48 83.3
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 2.8e-16 88.2 49 79.6
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 2.8e-16 88.2 49 81.6
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.8e-16 88.2 49 79.6
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 2.8e-16 88.2 56 73.2
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 3.6e-16 87.8 48 83.3
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 3.6e-16 87.8 48 79.2
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.6e-16 87.8 57 71.9
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 3.6e-16 87.8 49 79.6
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 3.6e-16 87.8 49 79.6
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 3.6e-16 87.8 63 61.9
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 4.7e-16 87.4 55 74.5
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 4.7e-16 87.4 55 74.5
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 4.7e-16 87.4 52 75.0
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 4.7e-16 87.4 52 75.0
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 4.7e-16 87.4 48 81.2
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 4.7e-16 87.4 56 73.2
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 6.2e-16 87.0 55 74.5
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 6.2e-16 87.0 50 74.0
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 6.2e-16 87.0 48 81.2
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 6.2e-16 87.0 49 81.6
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 6.2e-16 87.0 49 77.6
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 6.2e-16 87.0 63 63.5
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 6.2e-16 87.0 55 72.7
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 8.1e-16 86.7 48 79.2
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 8.1e-16 86.7 49 77.6
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 8.1e-16 86.7 56 75.0
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 8.1e-16 86.7 49 77.6
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 1.1e-15 86.3 56 71.4
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.1e-15 86.3 49 79.6
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 1.1e-15 86.3 49 77.6
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 1.1e-15 86.3 48 79.2
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 1.1e-15 86.3 58 69.0
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.4e-15 85.9 54 70.4
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 1.4e-15 85.9 52 73.1
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 1.4e-15 85.9 58 67.2
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 1.4e-15 85.9 52 73.1
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 1.4e-15 85.9 56 73.2
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 1.8e-15 85.5 55 72.7
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 2.3e-15 85.1 46 82.6
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 2.3e-15 85.1 49 77.6
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 3.1e-15 84.7 48 79.2
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 4.0e-15 84.3 56 71.4
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 5.2e-15 84.0 46 80.4
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 5.2e-15 84.0 46 80.4
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 5.2e-15 84.0 46 80.4
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 5.2e-15 84.0 46 80.4
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 5.2e-15 84.0 48 77.1
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 6.8e-15 83.6 56 71.4
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 6.8e-15 83.6 48 72.9
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 6.8e-15 83.6 54 72.2
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 6.8e-15 83.6 47 78.7
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 8.9e-15 83.2 49 73.5
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 8.9e-15 83.2 46 80.4
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 8.9e-15 83.2 48 77.1
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.2e-14 82.8 46 78.3
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 1.2e-14 82.8 46 80.4
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 1.2e-14 82.8 46 80.4
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 1.2e-14 82.8 46 80.4
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 1.2e-14 82.8 46 80.4
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 1.2e-14 82.8 46 80.4
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.2e-14 82.8 53 67.9
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.2e-14 82.8 48 75.0
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.2e-14 82.8 46 80.4
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 1.5e-14 82.4 46 78.3
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 2.0e-14 82.0 46 76.1
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.0e-14 82.0 49 77.6
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 2.6e-14 81.6 48 72.9
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 3.4e-14 81.3 45 80.0
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 3.4e-14 81.3 45 80.0
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 3.4e-14 81.3 45 80.0
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 3.4e-14 81.3 45 80.0
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 3.4e-14 81.3 45 80.0
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 3.4e-14 81.3 45 80.0
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 4.4e-14 80.9 57 68.4
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 4.4e-14 80.9 46 76.1
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 5.8e-14 80.5 47 74.5
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 7.5e-14 80.1 46 78.3
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 9.9e-14 79.7 56 67.9
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 9.9e-14 79.7 52 69.2
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 9.9e-14 79.7 49 73.5
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 1.3e-13 79.3 47 72.3
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.2e-13 78.6 51 68.6
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 2.9e-13 78.2 46 76.1
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 2.9e-13 78.2 49 73.5
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 4.9e-13 77.4 48 75.0
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 4.9e-13 77.4 48 75.0
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 8.3e-13 76.6 47 70.2
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 8.3e-13 76.6 46 69.6
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 8.3e-13 76.6 46 69.6
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 1.1e-12 76.3 46 69.6
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 1.1e-12 76.3 49 67.3
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.4e-12 75.9 49 71.4
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.4e-12 75.1 47 70.2
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 3.2e-12 74.7 47 66.0
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 4.1e-12 74.3 80 51.2
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 4.1e-12 74.3 56 62.5
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 7.1e-12 73.6 47 72.3
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 7.1e-12 73.6 49 67.3
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 1.2e-11 72.8 49 65.3
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.6e-11 72.4 49 65.3
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 4.6e-11 70.9 78 48.7
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.7e-10 68.9 53 62.3
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 2.3e-10 68.6 36 80.6
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 8.6e-10 66.6 47 59.6
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 2.5e-09 65.1 47 55.3
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.3e-09 63.5 47 61.7
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.3e-09 63.5 47 61.7
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 9.5e-09 63.2 40 67.5
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 4.7e-08 60.8 48 62.5
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 1.4e-07 59.3 36 75.0
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 8.9e-07 56.6 32 75.0
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 4.4e-06 54.3 30 83.3
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.8e-06 53.9 36 69.4


User provided reference genes

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