Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 2.0e-38 161.8 73 100.0
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 5.2e-18 94.0 67 67.2
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 2.4e-15 85.1 67 61.2
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.2e-14 82.8 67 62.7
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.6e-14 82.4 72 58.3
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 2.7e-14 81.6 70 60.0
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 3.5e-14 81.3 70 55.7
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 7.8e-14 80.1 66 59.1
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 7.8e-14 80.1 64 59.4
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 7.8e-14 80.1 68 60.3
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 1.0e-13 79.7 68 58.8
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.7e-13 79.0 58 63.8
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.7e-13 79.0 58 63.8
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 1.7e-13 79.0 58 63.8
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 2.9e-13 78.2 62 64.5
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 5.0e-13 77.4 71 57.7
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 5.0e-13 77.4 66 62.1
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 6.6e-13 77.0 62 61.3
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 6.6e-13 77.0 59 62.7
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 6.6e-13 77.0 59 62.7
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 6.6e-13 77.0 60 65.0
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.1e-12 76.3 61 62.3
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 1.1e-12 76.3 60 60.0
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.5e-12 75.9 66 56.1
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.5e-12 75.9 60 61.7
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 2.5e-12 75.1 64 57.8
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 2.5e-12 75.1 61 62.3
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.5e-12 75.1 60 61.7
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 2.5e-12 75.1 64 57.8
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 3.3e-12 74.7 72 55.6
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 5.6e-12 73.9 61 60.7
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 5.6e-12 73.9 61 60.7
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 9.5e-12 73.2 63 55.6
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 1.2e-11 72.8 58 62.1
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.6e-11 72.4 61 60.7
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 1.6e-11 72.4 59 59.3
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.6e-11 72.4 76 51.3
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 2.1e-11 72.0 70 55.7
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.1e-11 72.0 58 62.1
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 2.1e-11 72.0 62 53.2
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 2.8e-11 71.6 61 57.4
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 3.6e-11 71.2 64 57.8
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 3.6e-11 71.2 60 60.0
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 6.1e-11 70.5 62 61.3
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 8.0e-11 70.1 72 50.0
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 8.0e-11 70.1 59 57.6
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 8.0e-11 70.1 60 56.7
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 1.0e-10 69.7 64 56.2
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 1.0e-10 69.7 61 57.4
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 1.0e-10 69.7 67 53.7
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 1.4e-10 69.3 62 58.1
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.8e-10 68.9 71 49.3
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 1.8e-10 68.9 62 53.2
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 2.3e-10 68.6 71 50.7
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 4.0e-10 67.8 72 52.8
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 5.2e-10 67.4 69 55.1
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 5.2e-10 67.4 83 44.6
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 5.2e-10 67.4 60 56.7
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 5.2e-10 67.4 66 56.1
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 6.8e-10 67.0 76 47.4
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 6.8e-10 67.0 66 50.0
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 1.2e-09 66.2 72 55.6
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.5e-09 65.9 66 50.0
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 1.5e-09 65.9 66 50.0
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.0e-09 65.5 65 52.3
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 2.6e-09 65.1 59 55.9
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 2.6e-09 65.1 70 47.1
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 3.4e-09 64.7 66 48.5
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 3.4e-09 64.7 62 54.8
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.4e-09 64.7 64 54.7
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 3.4e-09 64.7 66 48.5
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 4.4e-09 64.3 63 50.8
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 5.8e-09 63.9 66 50.0
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 1.3e-08 62.8 63 52.4
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 1.7e-08 62.4 66 43.9
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 2.2e-08 62.0 67 46.3
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 2.2e-08 62.0 68 47.1
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 2.9e-08 61.6 64 54.7
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 3.7e-08 61.2 72 47.2
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 4.9e-08 60.8 66 48.5
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 6.4e-08 60.5 85 41.2
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 8.3e-08 60.1 68 47.1
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.1e-07 59.7 64 53.1
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.1e-07 59.7 80 42.5
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 1.4e-07 59.3 44 61.4
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 1.9e-07 58.9 56 53.6
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 1.9e-07 58.9 76 44.7
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.4e-07 58.5 78 41.0
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.4e-07 58.5 78 41.0
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 2.4e-07 58.5 75 41.3
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.4e-07 58.5 75 41.3
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 3.2e-07 58.2 70 44.3
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 3.2e-07 58.2 73 42.5
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.2e-07 58.2 75 41.3
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 4.1e-07 57.8 78 41.0
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 4.1e-07 57.8 61 54.1
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 5.4e-07 57.4 63 47.6
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 7.0e-07 57.0 75 42.7
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 7.0e-07 57.0 75 40.0
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 7.0e-07 57.0 75 40.0
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 7.0e-07 57.0 75 40.0
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 7.0e-07 57.0 75 40.0
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 7.0e-07 57.0 64 48.4
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 9.2e-07 56.6 73 41.1
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 9.2e-07 56.6 72 43.1
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 9.2e-07 56.6 75 40.0
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 9.2e-07 56.6 75 40.0
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 9.2e-07 56.6 79 40.5
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 9.2e-07 56.6 75 40.0
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 9.2e-07 56.6 79 40.5
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 9.2e-07 56.6 75 40.0
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 9.2e-07 56.6 78 42.3
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 9.2e-07 56.6 75 40.0
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.6e-06 55.8 76 43.4
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 1.6e-06 55.8 71 40.8
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 1.6e-06 55.8 75 38.7
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 1.6e-06 55.8 71 40.8
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 1.6e-06 55.8 75 38.7
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 1.6e-06 55.8 75 38.7
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 1.6e-06 55.8 76 43.4
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 2.0e-06 55.5 79 39.2
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 2.0e-06 55.5 79 39.2
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 2.0e-06 55.5 79 39.2
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 2.0e-06 55.5 63 49.2
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.7e-06 55.1 79 40.5
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.7e-06 55.1 79 40.5
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.7e-06 55.1 64 48.4
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 3.5e-06 54.7 67 49.3
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 4.6e-06 54.3 82 37.8
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 4.6e-06 54.3 75 38.7
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.6e-06 54.3 83 42.2
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 7.8e-06 53.5 79 39.2
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 7.8e-06 53.5 79 39.2
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 7.8e-06 53.5 31 74.2


User provided reference genes

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