Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 0.0e+00 2662.5 1394 100.0
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1229.2 1438 51.4
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1228.8 1438 51.7
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1142.5 1422 48.9
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1137.9 1327 50.3
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1114.0 1422 46.7
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1102.4 1434 46.8
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1096.6 1425 47.2
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1091.3 1260 50.3
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1087.4 1455 45.9
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1079.7 1436 46.4
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 1.1e-310 1070.5 1427 46.1
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 4.0e-308 1062.0 1459 44.8
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 7.5e-307 1057.7 1426 44.8
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 4.5e-304 1048.5 1255 48.2
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 7.2e-302 1041.2 1248 47.6
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 1.6e-301 1040.0 1442 44.5
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 8.8e-300 1034.2 1443 44.4
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 1.2e-299 1033.9 1429 45.0
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 2.6e-299 1032.7 1422 45.4
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 9.8e-299 1030.8 1424 44.9
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 6.3e-298 1028.1 1427 45.7
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 7.0e-297 1024.6 1437 44.2
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 9.1e-297 1024.2 1360 45.0
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 3.5e-296 1022.3 1418 45.8
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 3.5e-296 1022.3 1249 47.2
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 5.5e-294 1015.0 1434 43.9
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 5.5e-294 1015.0 1250 47.4
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 8.9e-292 1007.7 1412 43.8
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 3.4e-291 1005.7 1442 43.4
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 1.3e-290 1003.8 1404 43.8
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 1.1e-289 1000.7 1241 47.6
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 1.4e-289 1000.3 1357 44.6
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 4.7e-285 985.3 1430 43.1
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 7.5e-283 978.0 1348 43.6
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 7.5e-283 978.0 1388 43.6
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 1.7e-282 976.9 1389 43.6
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 4.1e-281 972.2 1437 44.3
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 1.3e-279 967.2 1436 42.9
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 3.0e-279 966.1 1432 42.3
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 2.1e-277 959.9 1358 43.3
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 1.6e-272 943.7 1442 42.0
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 2.1e-272 943.3 1445 43.0
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 2.1e-269 933.3 1419 42.5
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 2.8e-269 932.9 1449 40.5
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 1.9e-265 920.2 1218 45.1
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 2.4e-265 919.8 1156 46.5
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 6.6e-263 911.8 1385 40.9
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 1.2e-261 907.5 1341 41.4
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 5.2e-260 902.1 1415 40.6
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 9.9e-259 897.9 1380 40.9
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 9.9e-259 897.9 1444 40.2
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 8.4e-258 894.8 1366 41.4
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 1.4e-257 894.0 1363 41.0
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 1.4e-257 894.0 1426 40.9
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 1.9e-257 893.6 1400 41.1
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 1.5e-254 884.0 1108 47.1
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 7.3e-254 881.7 1362 40.9
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 2.5e-246 856.7 1244 42.9
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 9.0e-236 821.6 1054 46.9
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 6.9e-228 795.4 1400 38.9
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 1.5e-219 767.7 1138 42.5
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 4.3e-214 749.6 1337 37.9
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 4.8e-213 746.1 1051 44.6
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 2.0e-211 740.7 1050 45.1
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 8.5e-210 735.3 1053 43.8
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 1.9e-209 734.2 1412 35.2
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 7.2e-209 732.3 1358 35.6
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 1.6e-208 731.1 1419 35.0
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 1.0e-207 728.4 1416 37.6
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 6.7e-207 725.7 1148 40.4
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 1.5e-206 724.5 1344 36.6
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 3.7e-197 693.3 856 47.8
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 2.2e-186 657.5 861 46.0
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 1.1e-153 548.9 900 39.1
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 2.4e-148 531.2 698 45.6
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 4.7e-144 516.9 713 44.5
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 1.1e-137 495.7 631 48.0
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 9.0e-135 486.1 901 36.6
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 7.4e-105 386.7 1546 26.3
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 9.1e-87 326.6 669 35.7
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 2.1e-75 288.9 367 47.1
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 5.7e-73 280.8 456 39.0
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 2.2e-69 268.9 291 52.2
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 2.1e-59 235.7 292 48.3
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 6.8e-58 230.7 246 52.4
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 9.5e-52 210.3 165 63.0
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 4.6e-38 164.9 209 49.3
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 2.1e-35 156.0 350 34.6
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 2.4e-23 115.9 120 55.8
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 7.3e-20 104.4 104 55.8
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 9.6e-20 104.0 281 33.1
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 3.6e-19 102.1 148 49.3
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 2.9e-16 92.4 128 41.4
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 1.2e-14 87.0 114 43.9
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 6.2e-11 74.7 91 48.4


User provided reference genes

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