Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 4.7e-117 424.5 205 100.0
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 3.1e-92 342.0 176 95.5
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 1.2e-91 340.1 176 94.3
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.2e-91 340.1 176 93.2
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 1.2e-91 340.1 176 94.9
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.5e-91 339.7 212 80.7
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.4e-91 338.6 176 94.3
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 4.4e-91 338.2 176 94.3
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 5.8e-91 337.8 176 93.2
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 7.6e-91 337.4 176 93.8
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 7.6e-91 337.4 176 94.3
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 1.7e-90 336.3 176 93.8
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 4.9e-90 334.7 176 91.5
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 4.9e-90 334.7 176 93.2
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 4.9e-90 334.7 176 93.2
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 4.9e-90 334.7 176 92.6
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.1e-89 333.6 176 92.6
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 1.1e-89 333.6 176 93.2
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 1.1e-89 333.6 176 92.6
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 1.4e-89 333.2 176 92.0
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 1.9e-89 332.8 176 92.0
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 1.9e-89 332.8 176 92.0
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.9e-89 332.8 176 92.0
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 3.2e-89 332.0 176 92.6
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 3.2e-89 332.0 176 92.0
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 4.2e-89 331.6 176 91.5
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 4.2e-89 331.6 176 90.9
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 5.4e-89 331.3 179 92.7
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 5.4e-89 331.3 176 92.0
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 7.1e-89 330.9 176 91.5
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 9.3e-89 330.5 177 91.0
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 1.6e-88 329.7 176 90.3
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 1.6e-88 329.7 176 90.3
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 2.1e-88 329.3 176 90.3
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 2.1e-88 329.3 176 92.0
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 3.5e-88 328.6 176 90.9
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 6.0e-88 327.8 176 88.6
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 7.8e-88 327.4 173 92.5
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 7.8e-88 327.4 176 91.5
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 1.0e-87 327.0 172 93.0
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.3e-87 326.6 176 89.2
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.3e-87 326.6 176 90.3
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 1.3e-87 326.6 176 90.3
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 1.3e-87 326.6 176 91.5
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 1.3e-87 326.6 176 91.5
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 1.7e-87 326.2 176 89.2
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 1.7e-87 326.2 176 89.8
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 1.7e-87 326.2 176 90.3
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 1.7e-87 326.2 176 89.2
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.7e-87 326.2 176 90.3
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 3.9e-87 325.1 173 91.3
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 3.9e-87 325.1 176 89.8
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 3.9e-87 325.1 176 90.3
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 5.1e-87 324.7 174 90.2
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 6.6e-87 324.3 196 83.2
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 8.7e-87 323.9 176 89.2
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 8.7e-87 323.9 174 90.8
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 1.5e-86 323.2 176 89.8
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 1.9e-86 322.8 176 88.6
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 4.3e-86 321.6 176 88.1
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 5.6e-86 321.2 176 88.1
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 7.3e-86 320.9 172 91.9
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 9.6e-86 320.5 176 88.1
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 9.6e-86 320.5 193 84.5
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 9.6e-86 320.5 175 88.0
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 2.8e-85 318.9 176 89.2
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 8.1e-85 317.4 176 86.9
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 1.8e-84 316.2 173 88.4
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 4.0e-84 315.1 176 86.9
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 9.0e-84 313.9 173 87.9
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 9.0e-84 313.9 176 88.1
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 1.5e-83 313.2 172 87.2
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 7.6e-83 310.8 188 83.0
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 7.6e-83 310.8 176 84.7
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 6.4e-82 307.8 176 85.2
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 8.4e-82 307.4 176 85.2
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 8.4e-82 307.4 176 85.2
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 8.4e-82 307.4 176 83.5
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 1.1e-81 307.0 176 84.7
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 2.4e-81 305.8 176 84.1
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 2.1e-80 302.8 176 83.5
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 2.1e-80 302.8 176 83.5
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 7.9e-80 300.8 172 87.2
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 7.9e-80 300.8 172 84.9
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 1.3e-79 300.1 173 84.4
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 1.3e-79 300.1 173 84.4
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 1.8e-79 299.7 176 82.4
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 6.7e-79 297.7 173 83.2
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 8.7e-79 297.4 173 83.2
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 1.9e-78 296.2 173 82.7
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 2.5e-78 295.8 172 83.1
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 3.3e-78 295.4 176 83.0
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 4.3e-78 295.0 202 75.7
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 9.0e-76 287.3 176 83.5
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 2.6e-75 285.8 155 91.6
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 3.4e-75 285.4 155 90.3
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 2.9e-74 282.3 180 78.3
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 3.8e-74 282.0 151 91.4
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 8.4e-74 280.8 176 79.5
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 3.2e-73 278.9 176 78.4
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.6e-72 276.6 147 89.1
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 3.5e-72 275.4 143 90.2
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 7.9e-72 274.2 155 85.2
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 4.3e-70 268.5 177 76.8
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 1.2e-67 260.4 155 82.6
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 7.1e-65 251.1 183 74.3
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 4.6e-64 248.4 138 84.8
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 1.0e-63 247.3 175 74.3
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 6.7e-63 244.6 122 94.3
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 1.1e-62 243.8 124 93.5
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 1.4e-60 236.9 126 88.9
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 7.2e-57 224.6 155 74.8
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.2e-56 223.8 178 61.2
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 5.1e-55 218.4 177 58.2
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 9.7e-54 214.2 179 60.3
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 3.2e-49 199.1 99 97.0
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 5.5e-49 198.4 99 96.0
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.3e-47 193.0 99 93.9
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 2.6e-46 189.5 101 89.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 7.4e-46 188.0 179 61.5
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 3.7e-45 185.7 99 88.9
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 3.1e-44 182.6 154 66.2
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 6.5e-42 174.9 94 89.4
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.0e-39 167.5 90 90.0
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.2e-37 159.8 86 90.7
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 1.4e-36 157.1 86 86.0
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 2.4e-36 156.4 89 79.8
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 1.3e-34 150.6 127 59.1
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 2.1e-32 143.3 87 78.2
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 6.3e-29 131.7 67 92.5
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.1e-28 131.0 86 79.1
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 1.9e-25 120.2 77 79.2
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.2e-25 118.2 70 85.7
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.9e-18 96.3 49 89.8
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 3.0e-15 86.3 215 30.7
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 2.0e-14 83.6 49 81.6
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 4.9e-13 79.0 182 30.2
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 6.3e-13 78.6 189 28.0
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.8e-12 77.0 182 30.8
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 7.0e-12 75.1 189 27.5
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 9.2e-12 74.7 184 28.3
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.5e-11 72.8 181 28.2
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 7.8e-11 71.6 189 28.6
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 1.3e-10 70.9 46 67.4
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.1e-09 67.8 188 29.3
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 2.1e-08 63.5 139 30.9
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 8.9e-07 58.2 198 23.2


User provided reference genes

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