Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 7.3e-83 310.5 150 100.0
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 1.5e-56 223.0 122 84.4
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 2.6e-56 222.2 120 88.3
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 7.6e-56 220.7 120 85.0
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 1.3e-55 219.9 141 75.2
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 1.7e-55 219.5 142 77.5
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 1.7e-55 219.5 120 83.3
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 2.2e-55 219.2 120 86.7
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 3.8e-55 218.4 120 83.3
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 3.8e-55 218.4 122 84.4
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 3.8e-55 218.4 116 87.9
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 4.9e-55 218.0 120 81.7
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 4.9e-55 218.0 120 81.7
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 8.4e-55 217.2 120 85.8
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 8.4e-55 217.2 120 87.5
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 8.4e-55 217.2 120 87.5
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 8.4e-55 217.2 120 87.5
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 8.4e-55 217.2 115 88.7
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 8.4e-55 217.2 120 87.5
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 1.1e-54 216.9 122 82.8
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 1.4e-54 216.5 120 85.0
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 1.4e-54 216.5 120 84.2
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 1.4e-54 216.5 120 81.7
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 3.2e-54 215.3 120 80.0
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 4.1e-54 214.9 120 84.2
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 4.1e-54 214.9 114 88.6
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 5.4e-54 214.5 120 86.7
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 7.1e-54 214.2 116 82.8
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 9.2e-54 213.8 120 84.2
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 9.2e-54 213.8 120 84.2
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 9.2e-54 213.8 121 82.6
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 1.2e-53 213.4 120 80.0
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 1.2e-53 213.4 122 84.4
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 1.6e-53 213.0 114 86.8
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 2.1e-53 212.6 120 80.0
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 2.1e-53 212.6 116 86.2
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 2.1e-53 212.6 120 83.3
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 2.1e-53 212.6 122 80.3
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 2.1e-53 212.6 120 84.2
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 2.7e-53 212.2 120 84.2
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 2.7e-53 212.2 123 82.9
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 2.7e-53 212.2 123 82.9
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 3.5e-53 211.8 115 85.2
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 4.6e-53 211.5 120 82.5
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 4.6e-53 211.5 119 79.8
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 6.0e-53 211.1 122 80.3
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 7.8e-53 210.7 120 86.7
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 1.0e-52 210.3 122 81.1
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.7e-52 209.5 115 84.3
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 2.3e-52 209.1 120 82.5
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 3.9e-52 208.4 126 76.2
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 3.9e-52 208.4 120 82.5
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 5.1e-52 208.0 122 81.1
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 8.6e-52 207.2 120 81.7
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.5e-51 206.5 120 79.2
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 1.5e-51 206.5 120 80.8
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.5e-51 206.5 120 80.0
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 1.9e-51 206.1 120 77.5
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 2.5e-51 205.7 120 80.8
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 5.6e-51 204.5 126 74.6
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 5.6e-51 204.5 120 77.5
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 7.3e-51 204.1 120 79.2
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 9.6e-51 203.8 121 78.5
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 9.6e-51 203.8 128 79.7
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 1.2e-50 203.4 114 81.6
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 4.7e-50 201.4 114 80.7
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 4.7e-50 201.4 114 81.6
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 4.7e-50 201.4 127 75.6
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 6.2e-50 201.1 114 79.8
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 6.2e-50 201.1 114 81.6
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 6.2e-50 201.1 120 79.2
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 8.1e-50 200.7 114 81.6
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 8.1e-50 200.7 114 79.8
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 8.1e-50 200.7 114 80.7
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 1.4e-49 199.9 120 75.0
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 3.1e-49 198.7 120 76.7
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 4.0e-49 198.4 120 75.8
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 4.0e-49 198.4 119 77.3
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 6.9e-49 197.6 104 87.5
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 9.0e-49 197.2 119 76.5
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 1.2e-48 196.8 120 75.0
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 1.5e-48 196.4 122 76.2
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 2.0e-48 196.1 126 72.2
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 3.4e-48 195.3 116 75.9
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 5.8e-48 194.5 127 73.2
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 7.6e-48 194.1 120 76.7
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 7.6e-48 194.1 120 76.7
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 7.6e-48 194.1 120 75.8
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 9.9e-48 193.7 120 75.8
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 2.9e-47 192.2 120 75.0
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 3.8e-47 191.8 132 70.5
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 8.4e-47 190.7 120 71.7
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 1.4e-46 189.9 116 75.0
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 5.4e-46 188.0 118 73.7
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 2.7e-45 185.7 119 73.9
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 4.6e-45 184.9 101 86.1
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 1.0e-44 183.7 104 81.7
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 1.7e-44 183.0 104 79.8
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 2.3e-44 182.6 130 69.2
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 2.3e-44 182.6 105 81.0
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 5.1e-44 181.4 104 81.7
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 5.1e-44 181.4 124 68.5
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 6.6e-44 181.0 120 71.7
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 6.6e-44 181.0 104 82.7
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 8.7e-44 180.6 104 83.7
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 8.7e-44 180.6 104 83.7
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 8.7e-44 180.6 120 71.7
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 1.5e-43 179.9 106 78.3
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 1.9e-43 179.5 99 83.8
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 3.3e-43 178.7 104 78.8
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 3.3e-43 178.7 104 78.8
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 4.3e-43 178.3 104 78.8
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 3.6e-42 175.3 98 81.6
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 4.8e-42 174.9 104 77.9
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 1.4e-41 173.3 104 77.9
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 5.3e-41 171.4 98 79.6
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 5.3e-41 171.4 98 80.6
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 3.8e-39 165.2 122 68.9
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.2e-37 160.2 85 87.1
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 1.6e-37 159.8 98 76.5
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 1.6e-37 159.8 98 76.5
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 1.6e-37 159.8 98 76.5
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 5.3e-33 144.8 111 57.7
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 2.4e-30 136.0 107 64.5
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 1.3e-28 130.2 109 53.2
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 7.4e-27 124.4 122 53.3
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 6.2e-26 121.3 66 83.3
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.8e-25 119.8 95 60.0
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 3.8e-23 112.1 66 78.8
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 8.4e-23 110.9 65 81.5
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 2.5e-22 109.4 86 64.0
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 1.2e-21 107.1 57 86.0
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 1.5e-16 90.1 65 61.5
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 1.9e-11 73.2 44 70.5
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 2.2e-10 69.7 50 58.0
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 1.0e-07 60.8 50 64.0
FAN02G4440 Fragaria x ananassa HOM05D012050 ORTHO05D011158 4.2e-06 55.5 31 74.2


User provided reference genes

Program Settings