Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 3.2e-178 628.2 308 100.0
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 3.6e-137 491.9 301 75.1
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.6e-137 491.9 309 74.8
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 6.2e-137 491.1 306 73.9
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 6.8e-136 487.6 297 73.7
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.2e-135 486.9 308 72.4
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 1.5e-135 486.5 303 73.9
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.5e-135 486.5 306 74.8
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 2.0e-135 486.1 305 73.1
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 7.5e-135 484.2 308 72.1
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 7.5e-135 484.2 301 73.8
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 7.5e-135 484.2 298 74.8
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 2.9e-134 482.3 301 72.8
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 2.9e-134 482.3 302 73.5
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 4.9e-134 481.5 295 73.6
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 1.1e-133 480.3 309 73.5
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 1.1e-133 480.3 301 73.1
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 4.1e-133 478.4 308 71.8
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 9.2e-133 477.2 308 72.4
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 9.2e-133 477.2 301 73.1
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 1.2e-132 476.9 301 73.4
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.2e-132 476.9 301 72.1
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 6.0e-132 474.6 308 72.7
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 1.0e-131 473.8 300 70.7
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 1.3e-131 473.4 295 72.5
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 1.7e-131 473.0 301 71.1
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 1.7e-131 473.0 295 72.5
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 3.0e-131 472.2 308 69.8
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 5.0e-131 471.5 303 70.6
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 6.6e-131 471.1 308 70.8
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 6.6e-131 471.1 299 71.9
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 8.6e-131 470.7 306 70.6
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.1e-130 470.3 308 71.4
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 2.5e-130 469.2 301 70.4
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 3.3e-130 468.8 299 72.6
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 3.3e-130 468.8 311 69.8
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 4.3e-130 468.4 295 71.2
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 5.6e-130 468.0 303 71.3
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 7.3e-130 467.6 308 72.1
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 9.5e-130 467.2 301 71.1
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 9.5e-130 467.2 308 69.8
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 9.5e-130 467.2 300 71.3
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 1.6e-129 466.5 300 71.3
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.1e-129 466.1 300 70.7
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.8e-129 465.7 301 70.4
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 6.2e-129 464.5 301 70.4
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 1.1e-128 463.8 301 70.1
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 1.1e-128 463.8 305 69.2
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 1.4e-128 463.4 302 72.8
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 1.4e-128 463.4 306 70.3
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 3.1e-128 462.2 295 70.8
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 5.2e-128 461.5 303 69.0
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 8.9e-128 460.7 302 70.5
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 1.5e-127 459.9 305 68.2
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 1.5e-127 459.9 298 70.1
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 2.6e-127 459.1 301 70.8
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.6e-127 459.1 301 69.8
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 5.8e-127 458.0 295 71.2
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 9.9e-127 457.2 305 70.2
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 1.3e-126 456.8 301 69.1
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.7e-126 456.4 299 71.6
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.9e-126 455.7 306 70.6
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 3.7e-126 455.3 301 69.1
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 4.9e-126 454.9 298 69.8
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 4.9e-126 454.9 308 69.5
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 6.4e-126 454.5 309 67.3
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 6.4e-126 454.5 298 69.8
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 8.3e-126 454.1 301 68.8
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 8.3e-126 454.1 308 67.9
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 1.4e-125 453.4 299 68.9
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 1.9e-125 453.0 304 69.1
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 2.4e-125 452.6 294 71.1
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 5.4e-125 451.4 298 68.8
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 6.0e-124 448.0 309 67.0
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 1.0e-123 447.2 305 66.6
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 1.3e-123 446.8 309 66.0
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 1.3e-123 446.8 343 63.6
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 1.3e-123 446.8 309 66.3
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.7e-123 446.4 307 66.4
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 3.0e-123 445.7 308 65.9
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 3.0e-123 445.7 308 66.9
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 3.9e-123 445.3 308 65.9
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 5.1e-123 444.9 304 66.4
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 8.6e-123 444.1 303 67.0
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 8.6e-123 444.1 306 66.0
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 1.5e-122 443.4 314 65.6
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 1.9e-122 443.0 316 67.7
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 4.3e-122 441.8 307 65.5
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 2.8e-121 439.1 295 67.8
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 3.6e-121 438.7 305 65.9
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 3.6e-121 438.7 383 56.9
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 6.2e-121 438.0 374 58.0
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 1.1e-120 437.2 310 64.8
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 3.1e-120 435.6 304 64.8
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 7.6e-119 431.0 308 66.9
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 7.6e-119 431.0 299 66.6
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 1.7e-118 429.9 306 63.1
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.9e-117 426.4 308 63.6
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.2e-116 423.7 314 63.4
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 2.3e-115 419.5 299 65.9
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.8e-112 409.8 332 59.0
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 6.9e-112 407.9 308 64.6
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 5.8e-111 404.8 301 63.5
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 3.5e-108 395.6 272 69.1
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 1.3e-105 387.1 262 67.9
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.1e-104 384.0 260 67.7
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 2.1e-100 369.8 304 56.2
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 3.7e-97 359.0 295 58.6
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.8e-96 356.7 250 64.8
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 4.0e-96 355.5 284 58.8
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.9e-93 346.7 238 65.5
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 1.9e-93 346.7 216 74.1
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 1.5e-90 337.0 301 54.5
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 5.6e-90 335.1 201 77.1
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.7e-84 316.2 304 53.3
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 3.5e-84 315.8 265 58.9
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 8.5e-78 294.7 177 74.6
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 7.9e-76 288.1 210 61.9
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 1.1e-74 284.3 177 71.2
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.1e-69 267.7 237 53.6
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 3.3e-66 256.1 178 69.7
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 1.4e-64 250.8 181 67.4
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.1e-60 236.9 142 74.6
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.5e-53 214.2 185 54.6
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.8e-51 207.2 142 66.9
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 5.0e-46 189.1 129 66.7
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 1.1e-45 188.0 170 50.6
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.3e-43 180.3 107 77.6
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 1.3e-41 174.5 130 63.1
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 1.7e-41 174.1 129 64.3
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.8e-40 170.6 145 57.2
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.2e-36 157.9 109 69.7
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.7e-36 156.0 109 71.6
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 1.3e-33 147.9 113 63.7
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 1.2e-31 141.4 110 61.8
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 3.1e-19 100.1 70 64.3
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.5e-18 97.8 53 81.1


User provided reference genes

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