Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 3.9e-176 621.3 304 100.0
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 5.4e-53 212.2 149 65.8
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 1.2e-52 211.1 148 68.2
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.6e-52 210.7 148 66.9
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.6e-52 210.7 148 66.9
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 8.7e-51 204.9 149 65.1
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 1.5e-50 204.1 148 64.9
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 1.5e-50 204.1 148 64.2
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 7.4e-50 201.8 148 64.2
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 9.6e-50 201.4 152 61.8
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 1.3e-49 201.1 154 62.3
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 1.6e-49 200.7 148 62.8
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 2.8e-49 199.9 148 62.8
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 2.8e-49 199.9 148 64.2
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 4.8e-49 199.1 148 64.9
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 1.4e-48 197.6 148 62.2
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 1.8e-48 197.2 143 67.1
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 3.1e-48 196.4 146 65.1
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 6.9e-48 195.3 146 63.0
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 9.0e-48 194.9 141 63.8
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 9.0e-48 194.9 170 55.9
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 1.2e-47 194.5 148 64.9
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 1.2e-47 194.5 148 60.8
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 1.2e-47 194.5 149 67.1
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 1.2e-47 194.5 148 62.2
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 1.2e-47 194.5 148 62.2
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 1.5e-47 194.1 131 73.3
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 2.0e-47 193.7 148 61.5
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 2.0e-47 193.7 148 61.5
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 2.0e-47 193.7 148 64.2
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 2.0e-47 193.7 148 60.1
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 2.0e-47 193.7 148 62.2
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 2.0e-47 193.7 146 63.7
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 2.6e-47 193.4 144 63.2
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 5.8e-47 192.2 149 65.8
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 1.0e-46 191.4 146 59.6
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 1.0e-46 191.4 146 63.7
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 1.3e-46 191.0 149 62.4
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 2.2e-46 190.3 146 62.3
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 2.9e-46 189.9 148 59.5
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 3.8e-46 189.5 145 61.4
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 8.4e-46 188.3 148 58.1
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 8.4e-46 188.3 172 55.8
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 1.1e-45 188.0 148 58.8
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 1.4e-45 187.6 172 55.8
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 1.9e-45 187.2 148 58.8
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 3.2e-45 186.4 148 58.8
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 4.2e-45 186.0 148 58.1
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 4.2e-45 186.0 148 58.1
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 5.5e-45 185.7 148 58.8
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 7.1e-45 185.3 146 61.0
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 7.1e-45 185.3 154 59.7
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 9.3e-45 184.9 148 58.1
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 2.7e-44 183.3 146 61.0
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 2.7e-44 183.3 148 57.4
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 3.5e-44 183.0 168 55.4
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 3.5e-44 183.0 165 57.0
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 4.6e-44 182.6 143 62.2
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 7.9e-44 181.8 186 51.1
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 1.3e-43 181.0 148 59.5
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 1.8e-43 180.6 153 56.9
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 1.8e-43 180.6 149 58.4
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 3.0e-43 179.9 148 59.5
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 3.0e-43 179.9 148 58.1
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 5.1e-43 179.1 148 56.1
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 6.7e-43 178.7 149 57.7
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 1.1e-42 177.9 145 56.6
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 1.5e-42 177.6 148 56.1
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 1.5e-42 177.6 143 58.0
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 1.9e-42 177.2 148 55.4
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 1.9e-42 177.2 186 51.1
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 2.5e-42 176.8 148 56.8
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 2.5e-42 176.8 148 56.8
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 3.3e-42 176.4 143 56.6
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 3.3e-42 176.4 143 57.3
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 3.3e-42 176.4 149 59.7
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 5.7e-42 175.6 213 45.1
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 7.4e-42 175.3 143 56.6
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 7.4e-42 175.3 143 56.6
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 9.6e-42 174.9 143 56.6
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 9.6e-42 174.9 143 56.6
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 1.3e-41 174.5 143 56.6
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 1.3e-41 174.5 151 55.6
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 3.7e-41 172.9 174 52.9
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 8.2e-41 171.8 144 56.9
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 8.2e-41 171.8 139 57.6
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 3.1e-40 169.9 144 54.9
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 1.2e-39 167.9 144 54.9
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 1.2e-39 167.9 144 54.9
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 2.9e-38 163.3 147 54.4
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 2.9e-38 163.3 145 52.4
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 3.3e-34 149.8 111 66.7
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 1.3e-33 147.9 120 55.8
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 1.6e-33 147.5 120 56.7
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 3.4e-31 139.8 119 54.6
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 6.5e-30 135.6 105 61.0
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 3.0e-27 126.7 94 62.8
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 7.4e-26 122.1 103 53.4
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 4.1e-24 116.3 143 48.3
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 6.9e-24 115.5 104 53.8
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 7.2e-21 105.5 141 32.6
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 5.1e-19 99.4 149 32.9
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.5e-18 97.8 65 67.7
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 7.4e-18 95.5 64 68.8
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.1e-16 91.7 66 65.2
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.6e-15 87.8 82 56.1
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 2.2e-14 84.0 142 29.6
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 9.4e-13 78.6 82 45.1
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 1.2e-12 78.2 102 45.1
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 2.6e-10 70.5 66 53.0
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 1.3e-09 68.2 123 39.0
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.1e-08 65.1 45 64.4
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 7.0e-08 62.4 66 47.0
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 2.2e-06 57.4 38 65.8


User provided reference genes

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